RAxML Next Generation: faster, easier-to-use and more flexible
☆477Sep 3, 2026Updated this week
Alternatives and similar repositories for raxml-ng
Users that are interested in raxml-ng are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Best-fit model selection☆90Mar 21, 2024Updated 2 years ago
- ☆351Mar 4, 2025Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆335Jul 22, 2026Updated last month
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆258Jun 25, 2026Updated 2 months ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆278Updated this week
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆255Updated this week
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- Mummer alignment tool☆574Feb 4, 2025Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆269Updated this week
- Official home of genome aligner based upon notion of Cactus graphs☆703Updated this week
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆341Jul 7, 2023Updated 3 years ago
- An updated pipeline for pangenome investigation☆374Jul 2, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool to plot synteny and structural rearrangements between genomes☆354Jul 27, 2026Updated last month
- Synteny and Rearrangement Identifier☆485Jul 1, 2026Updated 2 months ago
- Automatically exported from code.google.com/p/figtree☆489May 17, 2026Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆469Jun 17, 2026Updated 2 months ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆115Jul 27, 2026Updated last month
- Efficient phylogenetic tree inference for massive taxonomic datasets☆147Apr 6, 2025Updated last year
- Fast and accurately polish the genome generated by long reads.☆246Jan 9, 2025Updated last year
- Phylogenetic orthology inference for comparative genomics☆869Jul 15, 2025Updated last year
- phylogenetics tools for linux (and other mostly posix compliant) computers☆127Apr 18, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆278Jun 26, 2025Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆299May 28, 2026Updated 3 months ago
- A grammar of graphics for comparative genomics☆779Updated this week
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆243Dec 29, 2023Updated 2 years ago
- Align proteins to genomes with splicing and frameshift☆417Jan 5, 2026Updated 7 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆576Feb 14, 2024Updated 2 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,244May 19, 2026Updated 3 months ago
- Genome annotation with AUGUSTUS☆339May 30, 2026Updated 3 months ago
- A genome completeness evaluation tool based on miniprot☆262Aug 17, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Program for aligning DNA sequences, a pairwise aligner.☆252May 20, 2026Updated 3 months ago
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆884Jun 1, 2026Updated 3 months ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆397Feb 13, 2025Updated last year
- Fast genome analysis from unassembled short reads☆325Apr 8, 2024Updated 2 years ago
- Massively parallel phylogenetic placement of genetic sequences☆91Jun 14, 2026Updated 2 months ago
- Genome assembly evaluation tool☆520Jun 10, 2026Updated 2 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year