Alternatives and similar repositories for raxml-ng:

Users that are interested in raxml-ng are comparing it to the libraries listed below

• iqtree / iqtree2
  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
  ☆261Updated this week
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆469Updated last month
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆329Updated 2 years ago
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆356Updated 4 months ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆323Updated this week
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆385Updated last year
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆329Updated this week
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆297Updated 5 months ago
• chhylp123 / hifiasm
  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
  ☆567Updated 3 weeks ago
• stamatak / standard-RAxML
  ☆333Updated 5 months ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆585Updated 8 months ago
• rrwick / Unicycler
  hybrid assembly pipeline for bacterial genomes
  ☆578Updated 5 months ago
• jtamames / SqueezeMeta
  A complete pipeline for metagenomic analysis
  ☆391Updated last week
• ablab / quast
  Genome assembly evaluation tool
  ☆416Updated 2 months ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆374Updated 3 weeks ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆313Updated 7 months ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆379Updated 2 weeks ago
• simonhmartin / genomics_general
  General tools for genomic analyses.
  ☆353Updated 5 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆301Updated last year
• tseemann / abricate
  Mass screening of contigs for antimicrobial and virulence genes
  ☆382Updated last year
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆551Updated last month
• ComparativeGenomicsToolkit / cactus
  Official home of genome aligner based upon notion of Cactus graphs
  ☆540Updated this week
• nanoporetech / medaka
  Sequence correction provided by ONT Research
  ☆433Updated 3 months ago
• bactopia / bactopia
  A flexible pipeline for complete analysis of bacterial genomes
  ☆427Updated last month
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆261Updated last month
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆303Updated last week
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆206Updated 2 years ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆216Updated last year
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆291Updated last week
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆485Updated 11 months ago