Alternatives and similar repositories for muscle

Users that are interested in muscle are comparing it to the libraries listed below

• antismash / antismash
  antiSMASH
  ☆222Updated 2 weeks ago
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆346Updated last week
• MiguelMSandin / SSNetworks
  A brief, quick and dirty introduction to Sequence Similarity Networks
  ☆22Updated 2 years ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆130Updated 2 months ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆379Updated last month
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆169Updated last week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆113Updated 10 months ago
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆186Updated 2 weeks ago
• moshi4 / pyMSAviz
  MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
  ☆151Updated 9 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆268Updated 4 months ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆247Updated last year
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆294Updated this week
• cdanielmachado / carveme
  CarveMe: genome-scale metabolic model reconstruction
  ☆181Updated last week
• refresh-bio / FAMSA
  Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
  ☆199Updated 2 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆222Updated this week
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆303Updated 4 months ago
• althonos / pyhmmer
  Cython bindings and Python interface to HMMER3.
  ☆148Updated last month
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆360Updated 3 weeks ago
• hyattpd / Prodigal
  Prodigal Gene Prediction Software
  ☆502Updated last year
• gecrooks / weblogo
  WebLogo 3: Sequence Logos redrawn
  ☆152Updated 4 months ago
• lh3 / miniprot
  Align proteins to genomes with splicing and frameshift
  ☆379Updated 2 months ago
• soedinglab / plass
  sensitive and precise assembly of short sequencing reads
  ☆161Updated 11 months ago
• linsalrob / ComputationalGenomicsManual
  Robs manual for the computational genomics and bioinformatics class.
  ☆264Updated 10 months ago
• opencobra / memote
  memote – the genome-scale metabolic model test suite
  ☆140Updated last month
• medema-group / BiG-SCAPE
  Similarity networks of biosynthetic gene clusters
  ☆129Updated 3 weeks ago
• Merck / deepbgc
  BGC Detection and Classification Using Deep Learning
  ☆153Updated last year
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆127Updated last year
• bioconvert / bioconvert
  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
  ☆382Updated 3 months ago
• veg / hyphy
  HyPhy: Hypothesis testing using Phylogenies
  ☆240Updated this week
• weberlab-hhu / Helixer
  Using Deep Learning to predict gene annotations
  ☆219Updated last week