Alternatives and similar repositories for muscle

Users that are interested in muscle are comparing it to the libraries listed below

• antismash / antismash
  antiSMASH
  ☆214Updated last week
• ebi-pf-team / interproscan
  Genome-scale protein function classification
  ☆334Updated this week
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆110Updated 7 months ago
• mmcguffi / pLannotate
  Webserver and command line tool for annotating engineered plasmids
  ☆122Updated 2 weeks ago
• IndexThePlanet / Logan
  Logan Unitigs and Contigs
  ☆137Updated last month
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆411Updated 5 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆530Updated this week
• jotech / gapseq
  Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
  ☆181Updated 3 weeks ago
• Gaius-Augustus / Augustus
  Genome annotation with AUGUSTUS
  ☆308Updated 5 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆210Updated this week
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆355Updated last month
• WrightonLabCSU / DRAM
  Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  ☆285Updated 2 weeks ago
• weberlab-hhu / Helixer
  Using Deep Learning to predict gene annotations
  ☆198Updated 3 weeks ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆241Updated 11 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆420Updated 6 months ago
• primer3-org / primer3
  Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
  ☆254Updated last month
• kblin / ncbi-acc-download
  Download files from NCBI Entrez by accession
  ☆126Updated 9 months ago
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆288Updated last month
• KatyBrown / CIAlign
  ☆129Updated 9 months ago
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆152Updated 2 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…
  ☆162Updated 2 weeks ago
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆393Updated last month
• apcamargo / genomad
  geNomad: Identification of mobile genetic elements
  ☆246Updated 2 weeks ago
• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆628Updated last week
• aquaskyline / SOAPdenovo2
  Next generation sequencing reads de novo assembler.
  ☆233Updated last year
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆339Updated 2 weeks ago
• arpcard / rgi
  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…
  ☆372Updated 2 weeks ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆337Updated last month
• mummer4 / mummer
  Mummer alignment tool
  ☆516Updated 4 months ago
• EddyRivasLab / hmmer
  HMMER: biological sequence analysis using profile HMMs
  ☆367Updated 4 months ago