abacus-gene / paml
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?…
☆139Updated this week
Alternatives and similar repositories for paml:
Users that are interested in paml are comparing it to the libraries listed below
- Any Way to Show Multi genomic Synteny☆171Updated 3 months ago
- Version 5 of the CAFE phylogenetics software☆121Updated this week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆193Updated this week
- Fast and accurately polish the genome generated by long reads.☆217Updated 3 weeks ago
- ☆197Updated this week
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆115Updated 3 years ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆247Updated last month
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆182Updated 11 months ago
- oxford dot plots☆143Updated last week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆240Updated 2 months ago
- Bacterial ribosomal RNA predictor☆232Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆195Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- ☆165Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆133Updated 3 years ago
- Synteny and Rearrangement Identifier☆357Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆120Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆294Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆196Updated 5 months ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆155Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆108Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline☆330Updated last week
- Earl Grey: A fully automated TE curation and annotation pipeline☆152Updated this week
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆139Updated this week
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆110Updated last year
- A tool to circularize genome assemblies☆235Updated 9 months ago
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 3 months ago