abacus-gene / pamlLinks
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?…
☆161Updated 2 months ago
Alternatives and similar repositories for paml
Users that are interested in paml are comparing it to the libraries listed below
Sorting:
- Any Way to Show Multi genomic Synteny☆199Updated 2 weeks ago
- Fast and accurately polish the genome generated by long reads.☆227Updated 6 months ago
- Version 5 of the CAFE phylogenetics software☆134Updated 5 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆214Updated this week
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆145Updated this week
- A genome completeness evaluation tool based on miniprot☆216Updated 2 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆206Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆247Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆146Updated 5 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago
- ☆200Updated 2 months ago
- ☆212Updated 5 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 8 months ago
- A tool to circularize genome assemblies☆243Updated last year
- oxford dot plots☆156Updated 3 weeks ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆189Updated last year
- a tool for inferring species tree from sequencing reads☆150Updated 5 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆261Updated 6 months ago
- Nanopore data assembler☆157Updated 3 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆177Updated last week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆190Updated last year
- Pan-genome wide association studies☆198Updated last year
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆154Updated 3 months ago
- Using Deep Learning to predict gene annotations☆202Updated last month
- De-Novo Repeat Discovery Tool☆216Updated 3 weeks ago
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆183Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆313Updated 3 months ago
- Convert various sequence formats to FASTA☆136Updated 3 years ago
- source code for EVM☆112Updated 7 months ago