abacus-gene / pamlLinks
PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?…
☆160Updated last month
Alternatives and similar repositories for paml
Users that are interested in paml are comparing it to the libraries listed below
Sorting:
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- Any Way to Show Multi genomic Synteny☆194Updated 2 months ago
- Fast and accurately polish the genome generated by long reads.☆226Updated 5 months ago
- Bacterial ribosomal RNA predictor☆246Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆210Updated this week
- ☆211Updated 5 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆125Updated 7 months ago
- Eukaryotic Genome Annotation Pipeline☆355Updated last month
- Synteny and Rearrangement Identifier☆390Updated last month
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆141Updated 3 weeks ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆188Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆258Updated 6 months ago
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It…☆162Updated 2 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆146Updated 5 months ago
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆257Updated 7 months ago
- oxford dot plots☆154Updated this week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆205Updated this week
- geNomad: Identification of mobile genetic elements☆246Updated 2 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆232Updated 3 months ago
- An updated pipeline for pangenome investigation☆304Updated 3 months ago
- ☆198Updated 2 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆97Updated 4 months ago
- Scan contig files against PubMLST typing schemes☆234Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆214Updated 2 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆203Updated last year
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆152Updated 2 months ago
- Pan-genome wide association studies☆197Updated last year