Kinggerm / GetOrganelleLinks
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
☆366Updated 11 months ago
Alternatives and similar repositories for GetOrganelle
Users that are interested in GetOrganelle are comparing it to the libraries listed below
Sorting:
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆274Updated 3 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆327Updated 2 years ago
- Fast and accurate de novo assembler for long reads☆397Updated last year
- Synteny and Rearrangement Identifier☆444Updated 9 months ago
- General tools for genomic analyses.☆384Updated 11 months ago
- quality filtering tool for long reads☆387Updated 4 months ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆550Updated last year
- Extensive de-novo TE Annotator☆426Updated 3 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆288Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆337Updated 9 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆374Updated 3 years ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆365Updated 5 months ago
- ☆270Updated 7 months ago
- TransDecoder source☆301Updated 4 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆379Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆444Updated 3 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆339Updated 4 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆244Updated 4 years ago
- Any Way to Show Multi genomic Synteny☆217Updated 6 months ago
- An overview of all nanopack tools☆277Updated 2 years ago
- Finds SNP sites from a multi-FASTA alignment file☆272Updated 5 years ago
- Plotting scripts for long read sequencing data☆526Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216Updated 7 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Updated last year
- Bacterial ribosomal RNA predictor☆276Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆378Updated last week
- Assembly and binning of metagenomes☆269Updated last week
- PASA software☆198Updated 11 months ago
- Scan contig files against PubMLST typing schemes☆262Updated 3 weeks ago