Kinggerm / GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
☆321Updated last month
Alternatives and similar repositories for GetOrganelle:
Users that are interested in GetOrganelle are comparing it to the libraries listed below
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆307Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆186Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 10 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆253Updated 3 months ago
- General tools for genomic analyses.☆356Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆357Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆500Updated last year
- Finds SNP sites from a multi-FASTA alignment file☆257Updated 4 years ago
- Bacterial ribosomal RNA predictor☆239Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆148Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆394Updated 2 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Fast and accurate de novo assembler for long reads☆387Updated 11 months ago
- quality filtering tool for long reads☆327Updated last year
- Eukaryotic Genome Annotation Pipeline☆340Updated last month
- An overview of all nanopack tools☆239Updated last year
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆264Updated last month
- Rapid comparison and dereplication of genomes☆282Updated 3 months ago
- TransDecoder source☆288Updated 6 months ago
- Scan contig files against PubMLST typing schemes☆221Updated 2 years ago
- An updated pipeline for pangenome investigation☆291Updated last month
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆247Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆220Updated 3 months ago
- Tool to plot synteny and structural rearrangements between genomes☆300Updated this week
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆222Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆225Updated 4 years ago
- A tool to circularize genome assemblies☆240Updated last year
- Rapid large-scale prokaryote pan genome analysis☆341Updated 2 years ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆305Updated last month