Kinggerm / GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
☆310Updated 3 weeks ago
Alternatives and similar repositories for GetOrganelle:
Users that are interested in GetOrganelle are comparing it to the libraries listed below
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆305Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆250Updated 2 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆183Updated last year
- A complete pipeline for metagenomic analysis☆398Updated this week
- General tools for genomic analyses.☆356Updated last week
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆328Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆351Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆494Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated 4 months ago
- TransDecoder source☆285Updated 5 months ago
- quality filtering tool for long reads☆322Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 6 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆303Updated last week
- Fast and accurate de novo assembler for long reads☆380Updated 9 months ago
- Scan contig files against PubMLST typing schemes☆217Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Any Way to Show Multi genomic Synteny☆174Updated 4 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆218Updated 2 years ago
- De-Novo Repeat Discovery Tool☆205Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆299Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆415Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆385Updated last month
- Rapid comparison and dereplication of genomes☆276Updated 2 months ago
- Synteny and Rearrangement Identifier☆365Updated last week
- 🌈 Interactive analysis of metagenomics data☆409Updated 5 months ago
- Extensive de-novo TE Annotator☆363Updated last week
- Eukaryotic Genome Annotation Pipeline☆337Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆203Updated 3 months ago
- Rapid large-scale prokaryote pan genome analysis☆336Updated 2 years ago