tseemann / barrnap
Bacterial ribosomal RNA predictor
☆234Updated last year
Alternatives and similar repositories for barrnap:
Users that are interested in barrnap are comparing it to the libraries listed below
- A tool for generating consensus long-read assemblies for bacterial genomes☆314Updated 8 months ago
- ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads☆217Updated 2 years ago
- Scan contig files against PubMLST typing schemes☆212Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆296Updated this week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆134Updated 4 months ago
- Rapid comparison and dereplication of genomes☆275Updated 2 months ago
- An updated pipeline for pangenome investigation☆282Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆202Updated 2 months ago
- A tool to circularize genome assemblies☆236Updated 10 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 6 months ago
- Pan-genome wide association studies☆183Updated 8 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆182Updated last year
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- BSR-Based Allele Calling Algorithm☆140Updated last week
- A user-friendly workflow for phylogenomics☆204Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆333Updated 3 weeks ago
- quality filtering tool for long reads☆317Updated last year
- Convert various sequence formats to FASTA☆127Updated 2 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆347Updated 2 years ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆157Updated 2 weeks ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆302Updated 6 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆197Updated this week
- Processing pipeline for pan-genome visulization and exploration☆137Updated last year
- DAS Tool☆146Updated 9 months ago
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆182Updated last week
- ☆198Updated 3 weeks ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆360Updated 5 months ago
- "Reads to report" for public health and clinical microbiology☆138Updated 11 months ago
- Filtering and trimming of long read sequencing data☆198Updated 2 years ago