Alternatives and similar repositories for barrnap:

Users that are interested in barrnap are comparing it to the libraries listed below

• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆221Updated 2 years ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆318Updated 10 months ago
• MrOlm / drep
  Rapid comparison and dereplication of genomes
  ☆282Updated 3 months ago
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆222Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆240Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆193Updated 10 months ago
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆294Updated last month
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆199Updated 7 months ago
• AstrobioMike / GToTree
  A user-friendly workflow for phylogenomics
  ☆210Updated last week
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆206Updated 4 months ago
• barricklab / breseq
  breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…
  ☆160Updated this week
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆134Updated 2 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆345Updated last month
• phac-nml / mob-suite
  MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
  ☆141Updated 6 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆220Updated 3 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆357Updated 3 years ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆326Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆201Updated 2 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆300Updated this week
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆211Updated last year
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆226Updated 4 years ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated last month
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆367Updated 7 months ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆374Updated 2 weeks ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆143Updated this week
• wdecoster / chopper
  ☆183Updated 2 weeks ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆141Updated last month
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆204Updated 3 weeks ago
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆332Updated this week