dongzhang0725 / PhyloSuiteLinks
PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogenetics studies
☆161Updated this week
Alternatives and similar repositories for PhyloSuite
Users that are interested in PhyloSuite are comparing it to the libraries listed below
Sorting:
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆83Updated 2 years ago
- Helper Functions for Interactive Tree Of Life (iTOL)☆179Updated 3 weeks ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆133Updated last year
- Version 5 of the CAFE phylogenetics software☆153Updated 9 months ago
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆178Updated 2 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- Plastid Genome Annotator☆54Updated 5 years ago
- Any Way to Show Multi genomic Synteny☆211Updated 4 months ago
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆270Updated last month
- A pipeline used to identify different modes of duplicated gene pairs☆110Updated 4 months ago
- ☆83Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆151Updated 3 weeks ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 5 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆138Updated 2 years ago
- ☆128Updated last week
- This script will extract the intron feature gff3 and sequence from gene_exon gff3 and fasta file.☆33Updated 7 years ago
- 3D de novo assembly (3D DNA) pipeline☆218Updated 2 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆181Updated last month
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆102Updated last week
- Development version of Easyfig☆102Updated last year
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆118Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Metagenome analysis pipeline☆99Updated 4 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆100Updated last week
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆200Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆82Updated 4 years ago
- Pathogen NGS Documentary☆151Updated last year