ebi-pf-team / interproscan
Genome-scale protein function classification
☆315Updated 2 weeks ago
Alternatives and similar repositories for interproscan:
Users that are interested in interproscan are comparing it to the libraries listed below
- Fast genome-wide functional annotation through orthology assignment☆596Updated 10 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆486Updated this week
- Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…☆235Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆337Updated last week
- ATLAS - Three commands to start analyzing your metagenome data☆384Updated 2 months ago
- ☆235Updated 9 months ago
- Gene cluster comparison figure generator☆555Updated 3 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆400Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆388Updated last month
- A complete pipeline for metagenomic analysis☆398Updated this week
- NCBI Prokaryotic Genome Annotation Pipeline☆329Updated last week
- Bioinformatics Workbook repository☆184Updated last week
- NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org☆271Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- antiSMASH☆197Updated last week
- TransDecoder source☆285Updated 5 months ago
- Phylogenetic orthology inference for comparative genomics☆742Updated 4 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆228Updated 7 months ago
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆197Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆415Updated last year
- Rapid large-scale prokaryote pan genome analysis☆337Updated 2 years ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆401Updated last month
- A genome visualization python package for comparative genomics☆312Updated 2 months ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆814Updated 6 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆489Updated last week
- ☆264Updated last month
- hybrid assembly pipeline for bacterial genomes☆585Updated 7 months ago
- Transcript assembly and quantification for RNA-Seq☆417Updated 3 weeks ago
- Prodigal Gene Prediction Software☆470Updated last year
- SortMeRNA: next-generation sequence filtering and alignment tool☆254Updated 2 months ago