Alternatives and similar repositories for interproscan:

Users that are interested in interproscan are comparing it to the libraries listed below

• eggnogdb / eggnog-mapper
  Fast genome-wide functional annotation through orthology assignment
  ☆614Updated 11 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 7 months ago
• oschwengers / bakta
  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
  ☆505Updated last month
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆409Updated 4 months ago
• usadellab / Trimmomatic
  ☆242Updated 11 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆202Updated this week
• ncbi / pgap
  NCBI Prokaryotic Genome Annotation Pipeline
  ☆335Updated this week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆227Updated 4 years ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆346Updated last month
• metagenome-atlas / atlas
  ATLAS - Three commands to start analyzing your metagenome data
  ☆386Updated last month
• antismash / antismash
  antiSMASH
  ☆205Updated last week
• biobakery / MetaPhlAn
  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
  ☆338Updated last week
• rcedgar / muscle
  Multiple sequence and structure alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, e…
  ☆242Updated 3 weeks ago
• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆400Updated 3 months ago
• gamcil / clinker
  Gene cluster comparison figure generator
  ☆572Updated 5 months ago
• davidemms / OrthoFinder
  Phylogenetic orthology inference for comparative genomics
  ☆755Updated 6 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆134Updated 10 years ago
• franciscozorrilla / metaGEM
  An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…
  ☆236Updated 9 months ago
• pcingola / SnpEff
  ☆272Updated 2 months ago
• mikolmogorov / Flye
  De novo assembler for single molecule sequencing reads using repeat graphs
  ☆826Updated this week
• ISUgenomics / bioinformatics-workbook
  Bioinformatics Workbook repository
  ☆184Updated this week
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆358Updated 11 months ago
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆282Updated last week
• shenwei356 / taxonkit
  A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV
  ☆412Updated last week
• stamatak / standard-RAxML
  ☆340Updated 2 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆209Updated last year
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆262Updated 4 months ago
• bxlab / metaWRAP
  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
  ☆419Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆370Updated 8 months ago
• moshi4 / pyGenomeViz
  A genome visualization python package for comparative genomics
  ☆321Updated this week