Dfam-consortium / RepeatModelerLinks
De-Novo Repeat Discovery Tool
☆229Updated 6 months ago
Alternatives and similar repositories for RepeatModeler
Users that are interested in RepeatModeler are comparing it to the libraries listed below
Sorting:
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆290Updated last month
- PASA software☆197Updated 11 months ago
- Fast and accurately polish the genome generated by long reads.☆240Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Updated 7 months ago
- Genome Assembly and Annotation Service code☆217Updated 2 years ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- 3D de novo assembly (3D DNA) pipeline☆221Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆340Updated 10 months ago
- k-mer based assembly evaluation☆338Updated last year
- Filtering and trimming of long read sequencing data☆213Updated 3 years ago
- Any Way to Show Multi genomic Synteny☆217Updated 7 months ago
- An overview of all nanopack tools☆280Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- ☆231Updated last week
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Updated 2 years ago
- haplotypic duplication identification tool☆275Updated 3 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆381Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆239Updated 7 months ago
- Long read based human genomic structural variation detection with cuteSV☆278Updated 4 months ago
- ☆232Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆285Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆192Updated 3 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆178Updated 2 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆285Updated 5 months ago
- Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.☆169Updated 9 months ago
- A tool to circularize genome assemblies☆252Updated last year
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆175Updated 2 years ago