evolbioinfo / goalignLinks
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
☆88Updated 3 weeks ago
Alternatives and similar repositories for goalign
Users that are interested in goalign are comparing it to the libraries listed below
Sorting:
- Split k-mer analysis – version 2☆104Updated last week
- Precise host read removal☆115Updated 5 months ago
- tiara – a tool for DNA sequence classification☆75Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆57Updated 9 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated last week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Rapid determination of appropriate reference genomes.☆99Updated last year
- IS mapping software☆57Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- Bifrost graph gene caller.☆98Updated 3 weeks ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆130Updated this week
- Reorients assembled microbial sequences☆132Updated 5 months ago
- ☆84Updated 2 years ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆81Updated 3 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆81Updated 9 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆74Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆84Updated last week
- A toolbox for comparative genomics.☆108Updated 4 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆99Updated 3 years ago
- Pan-genome inference and genotyping with long noisy or short accurate reads☆119Updated last year
- Convert GFF, fastas, annotation table and species name into Genbank.☆17Updated 3 weeks ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆149Updated 4 months ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆103Updated 2 years ago
- Collection of scripts for bacterial genomics☆48Updated 6 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆88Updated 3 years ago
- Massively parallel phylogenetic placement of genetic sequences☆86Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated 2 weeks ago
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆83Updated 3 months ago