Alternatives and similar repositories for goalign

Users that are interested in goalign are comparing it to the libraries listed below

• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆104Updated last week
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆81Updated 9 months ago
• bede / hostile
  Precise host read removal
  ☆115Updated 5 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆57Updated 9 months ago
• ibe-uw / tiara
  tiara – a tool for DNA sequence classification
  ☆74Updated last year
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆99Updated 3 years ago
• jhawkey / IS_mapper
  IS mapping software
  ☆57Updated 4 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆88Updated 2 years ago
• oschwengers / referenceseeker
  Rapid determination of appropriate reference genomes.
  ☆99Updated last year
• BenoitMorel / GeneRax
  ☆77Updated 8 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆83Updated 11 months ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆95Updated 4 months ago
• UCSC-LoweLab / tRNAscan-SE
  A program for detection of tRNA genes
  ☆83Updated 3 years ago
• JLSteenwyk / ClipKIT
  a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference
  ☆82Updated 3 months ago
• AuReMe / emapper2gbk
  Convert GFF, fastas, annotation table and species name into Genbank.
  ☆17Updated 3 weeks ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆33Updated 8 months ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆102Updated 2 years ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆118Updated last week
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆132Updated 5 months ago
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated 2 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated 2 weeks ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆146Updated last month
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆86Updated 3 years ago
• EBI-Metagenomics / mettannotator
  ☆81Updated 2 months ago
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆62Updated 6 months ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆126Updated last week
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆108Updated 4 years ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆98Updated 3 weeks ago
• linsalrob / PhiSpy
  Prediction of prophages from bacterial genomes
  ☆81Updated last week