Alternatives and similar repositories for goalign

Users that are interested in goalign are comparing it to the libraries listed below

• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆57Updated 8 months ago
• bede / hostile
  Precise host read removal
  ☆112Updated 4 months ago
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆88Updated 3 years ago
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆103Updated 3 weeks ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆68Updated 4 years ago
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆87Updated 2 years ago
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆106Updated 2 years ago
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆95Updated 3 months ago
• oschwengers / asap
  A scalable bacterial genome assembly, annotation and analysis pipeline
  ☆74Updated 2 years ago
• shandley / awesome-virome
  A listing of software, tools and databases useful for virome analysis
  ☆58Updated last week
• jhawkey / IS_mapper
  IS mapping software
  ☆57Updated 4 years ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆72Updated 2 years ago
• replikation / What_the_Phage
  WtP: Phage identification via nextflow and docker or singularity
  ☆103Updated this week
• oschwengers / referenceseeker
  Rapid determination of appropriate reference genomes.
  ☆99Updated 11 months ago
• jordanlab / stringMLST
  Fast k-mer based tool for multi locus sequence typing (MLST)
  ☆45Updated 5 years ago
• rrwick / Metagenomics-Index-Correction
  ☆84Updated 2 years ago
• fmalmeida / bacannot
  Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
  ☆105Updated last month
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆100Updated 2 years ago
• FOI-Bioinformatics / flextaxd
  FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…
  ☆67Updated 10 months ago
• rhysnewell / Lorikeet
  Strain resolver for metagenomics
  ☆80Updated last year
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆100Updated 3 years ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆76Updated 8 months ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆117Updated last year
• fmenardo / Treemmer
  Python tool to reduce size and redundancy of phylogenetic datasets
  ☆48Updated last month
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆33Updated 7 months ago
• bacpop / PopPUNK
  PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)
  ☆102Updated this week
• EBI-Metagenomics / mettannotator
  ☆81Updated last month
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆83Updated 4 months ago
• AllTheBacteria / AllTheBacteria
  Follow up to Grace Blackwell's 661k dataset, for 2023
  ☆127Updated 4 months ago
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆97Updated this week