Alternatives and similar repositories for goalign:

Users that are interested in goalign are comparing it to the libraries listed below

• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆102Updated last week
• patrickwest / EukRep
  Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
  ☆69Updated 8 months ago
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆118Updated last month
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆134Updated this week
• filip-husnik / pseudofinder
  Detection of pseudogene candidates in bacterial and archaeal genomes.
  ☆47Updated 11 months ago
• BenoitMorel / GeneRax
  ☆70Updated last year
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆60Updated 5 months ago
• gbouras13 / dnaapler
  Reorients assembled microbial sequences
  ☆112Updated 2 weeks ago
• art-egorov / lovis4u
  Bioinformatics tool for Locus Visualisation
  ☆88Updated last week
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆79Updated this week
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated 10 months ago
• genomehubs / blobtoolkit
  Interactive quality assessment of genome assemblies
  ☆94Updated this week
• fanglab / nanodisco
  nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…
  ☆68Updated 2 years ago
• robotoD / GenoVi
  GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
  ☆86Updated last year
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆124Updated 3 months ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆45Updated last month
• moshi4 / ANIclustermap
  A tool for drawing ANI clustermap between all-vs-all microbial genomes
  ☆74Updated 5 months ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 6 months ago
• xiezhq / ISEScan
  A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
  ☆91Updated last year
• EBI-Metagenomics / mettannotator
  ☆65Updated 2 months ago
• jhawkey / IS_mapper
  IS mapping software
  ☆53Updated 3 years ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆71Updated 2 weeks ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 2 years ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆68Updated last year
• adlape95 / Assembly-methods-nanopore
  Assembly methods for nanopore-based metagenomic sequencing: a comparative study
  ☆18Updated 4 years ago
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆100Updated last month
• rrwick / Metagenomics-Index-Correction
  ☆80Updated last year
• weisberglab / beav
  BEAV: Bacterial Element Annotation reVamped
  ☆61Updated 4 months ago
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆67Updated last year
• bacpop / ggCaller
  Bifrost graph gene caller.
  ☆93Updated 5 months ago