evolbioinfo / goalign
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
☆76Updated 4 months ago
Alternatives and similar repositories for goalign:
Users that are interested in goalign are comparing it to the libraries listed below
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last week
- A toolbox for comparative genomics.☆100Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆93Updated last week
- Reorients assembled microbial sequences☆107Updated 2 weeks ago
- DDBJ Fast Annotation and Submission Tool☆78Updated last month
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆88Updated last year
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- SKESA assembler☆114Updated 3 months ago
- ☆79Updated last year
- IS mapping software☆53Updated 3 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 9 months ago
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆72Updated 4 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆53Updated last month
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆97Updated last year
- A pipeline for running AMRfinderPlus and collating results into functional classes☆73Updated 5 months ago
- Bifrost graph gene caller.☆91Updated 4 months ago
- ☆41Updated last week
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆73Updated last year
- Precise host read removal. Friendly to microbes, hostile towards host☆84Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆71Updated last year
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆86Updated last year
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆46Updated 10 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆88Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆93Updated this week
- Convert GTDB taxonomy to NCBI taxdump format☆67Updated last year
- ☆70Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆180Updated 6 months ago