Efficient phylogenetic tree inference for massive taxonomic datasets
☆142Apr 6, 2025Updated last year
Alternatives and similar repositories for veryfasttree
Users that are interested in veryfasttree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆59Aug 6, 2023Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆250May 13, 2026Updated last week
- Recombination-free trees☆68Apr 26, 2026Updated 3 weeks ago
- Genome size estimation from long read overlaps☆89May 1, 2026Updated 3 weeks ago
- Universal and efficient structure-based core gene phylogeny with Foldseek and ProstT5☆88Mar 12, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 2 months ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆184Mar 17, 2026Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆56Updated this week
- Split k-mer analysis – version 2☆104Apr 9, 2026Updated last month
- Bifrost graph gene caller.☆98Apr 12, 2026Updated last month
- Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.☆89Mar 27, 2026Updated last month
- Snakemake workflow management system and CLI generation tool☆67Oct 22, 2025Updated 7 months ago
- Plasmid analysis using rearrangement distances☆55May 13, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Align proteins to genomes with splicing and frameshift☆402Jan 5, 2026Updated 4 months ago
- geNomad: Identification of mobile genetic elements☆312Mar 29, 2026Updated last month
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Fast viral consensus genome reconstruction☆27Feb 5, 2026Updated 3 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆32Apr 26, 2026Updated 3 weeks ago
- Rapid & standardized genome annotation using protein structural information☆64May 5, 2026Updated 2 weeks ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆69Sep 26, 2024Updated last year
- Genomewide Epistasis Analysis on Bacteria☆15May 13, 2025Updated last year
- Space-efficient pseudoalignment with a colored de Bruijn graph☆55Mar 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Two-dimensional outlier detection algorithm for pinpointing errors in small species-specific stretches of the multiple sequence alignment…☆17May 27, 2024Updated last year
- Python package for detection of chimerism and contamination in prokaryotic genomes.☆91May 11, 2026Updated last week
- Pipeline for analysing intergenic regions in bacteria☆39Oct 25, 2019Updated 6 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆141Apr 10, 2026Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆642May 15, 2026Updated last week
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆74Apr 1, 2026Updated last month
- ☆42Apr 2, 2024Updated 2 years ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆330Mar 12, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆41Mar 31, 2026Updated last month
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆260Updated this week
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆16Apr 29, 2022Updated 4 years ago
- RAxML Next Generation: faster, easier-to-use and more flexible☆464Updated this week
- Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)☆247Apr 30, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆467Mar 17, 2026Updated 2 months ago
- Quality control for phylogenetic analyses☆13Updated this week