citiususc / veryfasttreeLinks
Efficient phylogenetic tree inference for massive taxonomic datasets
☆141Updated 10 months ago
Alternatives and similar repositories for veryfasttree
Users that are interested in veryfasttree are comparing it to the libraries listed below
Sorting:
- FastOMA is a scalable software package to infer orthology relationship.☆90Updated 2 weeks ago
- Split k-mer analysis – version 2☆104Updated last week
- IQ-TREE version 3: software for phylogenetics☆107Updated this week
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- Python tool to reduce size and redundancy of phylogenetic datasets☆48Updated 2 months ago
- Bifrost graph gene caller.☆98Updated 3 weeks ago
- Precise host read removal☆115Updated 5 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆97Updated 8 months ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆52Updated this week
- ARG normalization by mapping to the ARO ontology.☆62Updated 6 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆103Updated last week
- viralVerify: viral contig verification tool☆74Updated 4 years ago
- tiara – a tool for DNA sequence classification☆74Updated last year
- A toolkit for prokaryotic comparative genomics☆51Updated 3 months ago
- CLI tool to annotate genes with KOfam☆88Updated 2 years ago
- Graph-based assembly phasing☆90Updated 2 months ago
- A tool for removing redundant genomes from a set of assemblies☆78Updated 5 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆84Updated this week
- A new high-resolution long-read metagenome assembler for even noisy reads☆121Updated this week
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆84Updated 2 weeks ago
- Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgam…☆52Updated 8 months ago
- PANgenome with Annotations, COre identification, Tree and corresponding Alignments☆80Updated 2 years ago
- Prediction of prophages from bacterial genomes☆81Updated last week
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆103Updated last week
- A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference☆41Updated this week
- a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference☆82Updated 3 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 3 weeks ago
- A listing of software, tools and databases useful for virome analysis☆60Updated this week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆81Updated 9 months ago