citiususc / veryfasttree

Related projects ⓘ

Alternatives and complementary repositories for veryfasttree

• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆72Updated last year
• marbl / meryl
  A genomic k-mer counter (and sequence utility) with nice features.
  ☆115Updated last week
• rrwick / Minipolish
  A tool for Racon polishing of miniasm assemblies
  ☆73Updated 3 years ago
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆96Updated last month
• shenwei356 / LexicMap
  LexicMap: efficient sequence alignment against millions of prokaryotic genomes
  ☆110Updated this week
• zhangrengang / TEsorter
  TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes
  ☆89Updated 3 weeks ago
• metagenlab / mummer2circos
  Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments
  ☆100Updated 11 months ago
• shandley / hecatomb
  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
  ☆56Updated 5 months ago
• snayfach / MGV
  Supporting code for uncultivated gut virus manuscript
  ☆66Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆106Updated 3 weeks ago
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆108Updated 5 months ago
• moshi4 / COGclassifier
  A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
  ☆55Updated 2 months ago
• gatech-genemark / ProtHint
  Protein hint generation pipeline for gene finding in eukaryotic genomes
  ☆56Updated last year
• HRGV / phyloFlash
  phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
  ☆77Updated last year
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆103Updated 10 months ago
• MDU-PHL / abritamr
  A pipeline for running AMRfinderPlus and collating results into functional classes
  ☆71Updated 2 months ago
• rrwick / Polypolish
  a short-read polishing tool for long-read assemblies
  ☆145Updated 5 months ago
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆86Updated last month
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆71Updated 2 weeks ago
• rrwick / Assembly-Dereplicator
  A tool for removing redundant genomes from a set of assemblies
  ☆68Updated last year
• GaetanBenoitDev / metaMDBG
  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.
  ☆100Updated last week
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆40Updated 3 months ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆82Updated last month
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆64Updated last week
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆76Updated 2 years ago
• vgl-hub / gfastats
  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…
  ☆91Updated last week
• sheinasim / HiFiAdapterFilt
  Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
  ☆81Updated 3 months ago
• bluenote-1577 / skani
  Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.
  ☆169Updated 4 months ago
• bhattlab / lathe
  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
  ☆69Updated 3 years ago
• ncbi / rapt
  Read Assembly and Annotation Pipeline Tool
  ☆55Updated last month