citiususc / veryfasttreeLinks
Efficient phylogenetic tree inference for massive taxonomic datasets
☆120Updated 3 months ago
Alternatives and similar repositories for veryfasttree
Users that are interested in veryfasttree are comparing it to the libraries listed below
Sorting:
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆97Updated 3 months ago
- Split k-mer analysis – version 2☆87Updated 5 months ago
- Graph-based assembly phasing☆85Updated 2 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆61Updated this week
- Bifrost graph gene caller.☆95Updated 9 months ago
- FastOMA is a scalable software package to infer orthology relationship.☆77Updated last week
- CLI tool to annotate genes with KOfam☆82Updated 2 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆50Updated last year
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 9 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆79Updated 2 months ago
- Efficient phylogenetic clustering of viral sequences☆87Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated 2 months ago
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆100Updated 3 weeks ago
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆111Updated last week
- ✏️ Genome assembly polishing & SNV detection☆69Updated 2 weeks ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆42Updated 7 months ago
- IQ-TREE version 3: software for phylogenetics☆55Updated this week
- Circular bacterial genome plots based on BLAST or NUCMER/PROMER alignments☆107Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆102Updated 9 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated 3 weeks ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated last year
- Precise host read removal☆102Updated last month
- Detection of incorrectly labeled sequences across kingdoms☆85Updated 2 years ago
- Small variant calling for haploid samples☆38Updated 2 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 2 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- A tool for Racon polishing of miniasm assemblies☆76Updated last month
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆58Updated last year