☆352Mar 4, 2025Updated last year
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆483Oct 30, 2026Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆273Updated this week
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 6 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆286Updated this week
- Automatically exported from code.google.com/p/prottest3☆39Jan 22, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Automatically exported from code.google.com/p/jmodeltest2☆84Sep 26, 2021Updated 5 years ago
- Accurate Species TRee ALgorithm☆282Apr 1, 2024Updated 2 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆200May 28, 2026Updated 5 months ago
- ☆17Aug 18, 2012Updated 14 years ago
- Mummer alignment tool☆579Feb 4, 2025Updated last year
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆72Mar 10, 2021Updated 5 years ago
- Efficient phylogenomic software by maximum likelihood☆211Nov 4, 2021Updated 5 years ago
- Phylogenetic orthology inference for comparative genomics☆880Jul 15, 2025Updated last year
- The core Mesquite repository☆113Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HyPhy 2.5.x (Maintenance Mode — bug fixes only). All active development has moved to HyPhy 3: https://github.com/veg/hyphy-3☆275Updated this week
- Automatically exported from code.google.com/p/figtree☆489May 17, 2026Updated 5 months ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆148Updated this week
- Genome annotation with AUGUSTUS☆346May 30, 2026Updated 5 months ago
- Fast genome-wide functional annotation through orthology assignment☆805Aug 13, 2026Updated 2 months ago
- Microbial RNA annotation☆321Apr 12, 2026Updated 6 months ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆280Updated this week
- Accelerated BLAST compatible local sequence aligner.☆1,335Updated this week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆340Jul 22, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Dendroscope program for analyzing and visualizing rooted phylogenetic trees and networks☆49Apr 28, 2025Updated last year
- Automatically exported from code.google.com/p/cdhit☆733Oct 11, 2022Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆391Apr 10, 2022Updated 4 years ago
- Bayesian Evolutionary Analysis Sampling Trees☆249Updated this week
- Program for aligning DNA sequences, a pairwise aligner.☆254Sep 29, 2026Updated last month
- A versatile and scalable algorithm for rogue taxon identification. Also includes implementations of the maximum agreement subtree, leaf s…☆23Aug 19, 2021Updated 5 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- Windowed Adaptive Trimming for fastq files using quality☆229May 8, 2017Updated 9 years ago
- SPAdes Genome Assembler☆972Oct 22, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A Python library for phylogenetic scripting, simulation, data processing and manipulation.☆237Updated this week
- An imagemagick-like frontend to Biopython SeqIO☆121Mar 18, 2024Updated 2 years ago
- Visualization and annotation of phylogenetic trees☆935Oct 29, 2026Updated last week
- Posterior summarisation in Bayesian phylogenetics☆77Sep 27, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆505Jul 7, 2026Updated 4 months ago
- Spatial Phylogenetic Reconstruction of Evolutionary Dynamics☆20Jan 13, 2019Updated 7 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆257Updated this week