stamatak / standard-RAxMLLinks
☆341Updated 3 months ago
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below
Sorting:
- Rapid large-scale prokaryote pan genome analysis☆346Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline☆351Updated last week
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆371Updated 9 months ago
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆285Updated last month
- RAxML Next Generation: faster, easier-to-use and more flexible☆428Updated this week
- TransDecoder source☆291Updated 8 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆409Updated 4 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆322Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆308Updated 3 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆408Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆232Updated 4 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆424Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆363Updated 3 years ago
- Mummer alignment tool☆510Updated 4 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆312Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆383Updated last year
- A user-friendly workflow for phylogenomics☆213Updated last week
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆281Updated last month
- Fast genome-wide functional annotation through orthology assignment☆622Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆416Updated 5 months ago
- Classifier for metagenomic sequences☆260Updated 7 months ago
- ATLAS - Three commands to start analyzing your metagenome data☆390Updated 3 weeks ago
- A tool to circularize genome assemblies☆242Updated last year
- Bacterial ribosomal RNA predictor☆245Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆514Updated 2 months ago
- Genome Assembly and Annotation Service code☆212Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆340Updated last year
- Rapid comparison and dereplication of genomes☆294Updated last month
- Read trimming tool for Illumina NGS data.☆136Updated 10 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆419Updated last year