☆347Mar 4, 2025Updated last year
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆452Updated this week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆250Updated this week
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆195Sep 9, 2025Updated 6 months ago
- Accurate Species TRee ALgorithm☆273Apr 1, 2024Updated last year
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Bayesian Evolutionary Analysis by Sampling Trees☆267Jan 22, 2026Updated last month
- Mummer alignment tool☆550Feb 4, 2025Updated last year
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 4 years ago
- Phylogenetic orthology inference for comparative genomics☆839Jul 15, 2025Updated 7 months ago
- The core Mesquite repository☆111Mar 1, 2026Updated last week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆325Apr 29, 2025Updated 10 months ago
- Fast genome-wide functional annotation through orthology assignment☆704Jun 18, 2025Updated 8 months ago
- Program for aligning DNA sequences, a pairwise aligner.☆239Jun 16, 2025Updated 8 months ago
- Automatically exported from code.google.com/p/figtree☆460Jun 25, 2025Updated 8 months ago
- Synteny and Rearrangement Identifier☆451Updated this week
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆257Jan 9, 2026Updated 2 months ago
- HyPhy: Hypothesis testing using Phylogenies☆250Feb 27, 2026Updated last week
- Accelerated BLAST compatible local sequence aligner.☆1,249Mar 2, 2026Updated last week
- Efficient phylogenomic software by maximum likelihood☆204Nov 4, 2021Updated 4 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆378Apr 10, 2022Updated 3 years ago
- Tool to plot synteny and structural rearrangements between genomes☆343Apr 7, 2025Updated 11 months ago
- Genome annotation with AUGUSTUS☆328Aug 15, 2025Updated 6 months ago
- Automatically exported from code.google.com/p/cdhit☆720Oct 11, 2022Updated 3 years ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆250Feb 25, 2026Updated last week
- Bayesian Evolutionary Analysis Sampling Trees☆235Mar 2, 2026Updated last week
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆167Feb 16, 2026Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆281Jan 10, 2026Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆463Dec 26, 2024Updated last year
- Visualization and annotation of phylogenetic trees☆918Jan 12, 2026Updated last month
- general purpose library for evaluating the likelihood of sequence evolution on trees☆143Feb 10, 2026Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆120May 21, 2024Updated last year
- Fast and accurately polish the genome generated by long reads.☆240Jan 9, 2025Updated last year
- SPAdes Genome Assembler☆913Updated this week
- Processing pipeline for pan-genome visulization and exploration☆144Oct 9, 2023Updated 2 years ago
- FASTA/FASTQ pre-processing programs☆198Mar 4, 2022Updated 4 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆197Feb 4, 2024Updated 2 years ago