stamatak / standard-RAxMLLinks
☆345Updated 5 months ago
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below
Sorting:
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- NCBI Prokaryotic Genome Annotation Pipeline☆353Updated this week
- Eukaryotic Genome Annotation Pipeline☆361Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆381Updated 2 months ago
- Tutorials on phylogenetic and phylogenomic inference☆388Updated last year
- Bacterial ribosomal RNA predictor☆252Updated last year
- RAxML Next Generation: faster, easier-to-use and more flexible☆434Updated 2 weeks ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆331Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆368Updated 3 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆290Updated 4 months ago
- 🌈 Interactive analysis of metagenomics data☆422Updated 3 weeks ago
- Fast Whole-Genome Similarity (ANI) Estimation☆426Updated last month
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆422Updated 7 months ago
- Finds SNP sites from a multi-FASTA alignment file☆264Updated 4 years ago
- A tool to circularize genome assemblies☆247Updated last year
- quality filtering tool for long reads☆363Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Classifier for metagenomic sequences☆264Updated 2 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆434Updated last year
- hybrid assembly pipeline for bacterial genomes☆608Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆300Updated 4 months ago
- adapter trimmer for Oxford Nanopore reads☆369Updated last year
- Fast genome and metagenome distance estimation using MinHash☆418Updated last year
- Genome assembly evaluation tool☆458Updated 9 months ago
- Genome annotation with AUGUSTUS☆315Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆276Updated this week
- Sequence correction provided by ONT Research☆474Updated last week
- A complete pipeline for metagenomic analysis☆424Updated last week
- Tool to plot synteny and structural rearrangements between genomes☆319Updated 4 months ago
- Mummer alignment tool☆525Updated 6 months ago