☆348Mar 4, 2025Updated last year
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆469Jun 30, 2026Updated last week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆263Jul 2, 2026Updated last week
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 6 years ago
- Automatically exported from code.google.com/p/prottest3☆39Jan 22, 2018Updated 8 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆84Sep 26, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆199May 28, 2026Updated last month
- Bayesian Evolutionary Analysis by Sampling Trees☆278Mar 27, 2026Updated 3 months ago
- Phylogenetic orthology inference for comparative genomics☆860Jul 15, 2025Updated 11 months ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Mummer alignment tool☆564Feb 4, 2025Updated last year
- The core Mesquite repository☆111Updated this week
- Fast genome-wide functional annotation through orthology assignment☆749May 22, 2026Updated last month
- Automatically exported from code.google.com/p/figtree☆480May 17, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Accelerated BLAST compatible local sequence aligner.☆1,308Jun 27, 2026Updated last week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆334Mar 12, 2026Updated 3 months ago
- Efficient phylogenomic software by maximum likelihood☆210Nov 4, 2021Updated 4 years ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆270Updated this week
- Automatically exported from code.google.com/p/cdhit☆734Oct 11, 2022Updated 3 years ago
- HyPhy: Hypothesis testing using Phylogenies☆266Jun 18, 2026Updated 2 weeks ago
- Program for aligning DNA sequences, a pairwise aligner.☆249May 20, 2026Updated last month
- Bayesian Evolutionary Analysis Sampling Trees☆245Updated this week
- Visualization and annotation of phylogenetic trees☆928Apr 29, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆174May 5, 2026Updated 2 months ago
- Synteny and Rearrangement Identifier☆474Jul 1, 2026Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆382Apr 10, 2022Updated 4 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆147Jul 1, 2026Updated last week
- Genome annotation with AUGUSTUS☆335May 30, 2026Updated last month
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆489Updated this week
- ☆17Aug 18, 2012Updated 13 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123Jun 2, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆880Jun 1, 2026Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Microbial RNA annotation☆300Apr 12, 2026Updated 2 months ago
- EasyCodeML: A visual tool for analysis of selection using CodeML☆85May 7, 2023Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- SPAdes Genome Assembler☆948Jun 16, 2026Updated 3 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆254Updated this week