☆348Mar 4, 2025Updated last year
Alternatives and similar repositories for standard-RAxML
Users that are interested in standard-RAxML are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RAxML Next Generation: faster, easier-to-use and more flexible☆466Updated this week
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆262Updated this week
- Exascale Maximum Likelihood (ExaML) code for phylogenetic inference using MPI☆50Jun 20, 2020Updated 5 years ago
- Automatically exported from code.google.com/p/prottest3☆37Jan 22, 2018Updated 8 years ago
- Automatically exported from code.google.com/p/jmodeltest2☆83Sep 26, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Accurate Species TRee ALgorithm☆279Apr 1, 2024Updated 2 years ago
- PhyML -- Phylogenetic estimation using (Maximum) Likelihood☆196Updated this week
- Bayesian Evolutionary Analysis by Sampling Trees☆274Mar 27, 2026Updated 2 months ago
- Phylogenetic orthology inference for comparative genomics☆857Jul 15, 2025Updated 10 months ago
- PartitionFinder discovers optimal partitioning schemes for DNA sequences.☆71Mar 10, 2021Updated 5 years ago
- Mummer alignment tool☆560Feb 4, 2025Updated last year
- The core Mesquite repository☆112Updated this week
- Fast genome-wide functional annotation through orthology assignment☆737May 22, 2026Updated last week
- Automatically exported from code.google.com/p/figtree☆471May 17, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Accelerated BLAST compatible local sequence aligner.☆1,296Updated this week
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆330Mar 12, 2026Updated 2 months ago
- MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentati…☆268Jan 9, 2026Updated 4 months ago
- Efficient phylogenomic software by maximum likelihood☆210Nov 4, 2021Updated 4 years ago
- Automatically exported from code.google.com/p/cdhit☆727Oct 11, 2022Updated 3 years ago
- HyPhy: Hypothesis testing using Phylogenies☆261May 19, 2026Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆249May 20, 2026Updated last week
- Bayesian Evolutionary Analysis Sampling Trees☆243May 21, 2026Updated last week
- Visualization and annotation of phylogenetic trees☆926Apr 29, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- PhyloSuite is an integrated and scalable desktop platform for streamlined molecular sequence data management and evolutionary phylogeneti…☆172May 5, 2026Updated 3 weeks ago
- Synteny and Rearrangement Identifier☆468May 20, 2026Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆381Apr 10, 2022Updated 4 years ago
- general purpose library for evaluating the likelihood of sequence evolution on trees☆146May 23, 2026Updated last week
- Genome annotation with AUGUSTUS☆333May 18, 2026Updated last week
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆480Apr 10, 2026Updated last month
- ☆17Aug 18, 2012Updated 13 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆217Jul 1, 2025Updated 10 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆123May 14, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection …☆878May 6, 2026Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Microbial RNA annotation☆293Apr 12, 2026Updated last month
- EasyCodeML: A visual tool for analysis of selection using CodeML☆85May 7, 2023Updated 3 years ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆50Jan 16, 2024Updated 2 years ago
- SPAdes Genome Assembler☆935May 10, 2026Updated 2 weeks ago
- Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction☆251Updated this week