Alternatives and similar repositories for deeppolisher

Users that are interested in deeppolisher are comparing it to the libraries listed below

• mrvollger / NucFreq
  ☆37Updated last year
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆40Updated 3 months ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆40Updated 7 months ago
• ablab / VerityMap
  ☆35Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• mrvollger / SafFire
  ☆30Updated 2 months ago
• maickrau / ribotin
  ☆36Updated last week
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆8Updated 5 months ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆34Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆51Updated last month
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆49Updated last year
• shilpagarg / DipAsm
  ☆76Updated 5 years ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• baozg / phased-assembly-check
  ☆30Updated 6 months ago
• kjenike / panagram
  ☆63Updated last week
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆38Updated last month
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆57Updated last month
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆43Updated 8 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week
• vgteam / giraffe-sv-paper
  ☆42Updated last year
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• human-pangenomics / hprc_intermediate_assembly
  ☆33Updated 2 weeks ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆79Updated 2 months ago
• yangao07 / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆30Updated last year
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year