Transformer-based sequence correction method for genome assembly polishing
☆100Mar 11, 2025Updated last year
Alternatives and similar repositories for deeppolisher
Users that are interested in deeppolisher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆32Feb 14, 2026Updated 2 months ago
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated last month
- ☆41Dec 29, 2025Updated 4 months ago
- ☆40Oct 6, 2025Updated 6 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 8 months ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆104Apr 8, 2026Updated 3 weeks ago
- A complete diploid human genome☆146Mar 27, 2026Updated last month
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- Evaluating genome assemblies☆120Mar 3, 2026Updated last month
- Extracting paths from assembly graphs☆24Apr 26, 2024Updated 2 years ago
- Constructing a pangenome gene graph☆206Aug 11, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆389Apr 22, 2026Updated last week
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Gene copy number prediction from k-mer frequencies☆16Apr 15, 2026Updated 2 weeks ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 4 months ago
- ☆42May 19, 2025Updated 11 months ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 5 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆215Mar 20, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- Repeat-aware polishing genomes assembled using HiFi long reads☆101Apr 7, 2026Updated 3 weeks ago
- Draw a dot plot from a paf alignment☆42Apr 24, 2026Updated last week
- SRF: Satellite Repeat Finder☆102Jan 8, 2024Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆37Feb 22, 2023Updated 3 years ago
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated last year
- Phased assembly variant caller☆139Dec 4, 2024Updated last year
- ☆13May 27, 2025Updated 11 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆41Sep 29, 2025Updated 7 months ago
- Genome Pair Rapid Dotter☆68Sep 2, 2021Updated 4 years ago
- A battery of methylation tools for PacBio HiFi reads☆51Dec 2, 2025Updated 4 months ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- Collection of tools for the analysis of CpG data☆111Jul 9, 2025Updated 9 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆242Apr 13, 2026Updated 2 weeks ago
- Bam Error Stats Tool (best): analysis of error types in aligned reads.☆141Feb 14, 2025Updated last year