Transformer-based sequence correction method for genome assembly polishing
☆107Mar 11, 2025Updated last year
Alternatives and similar repositories for deeppolisher
Users that are interested in deeppolisher are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆44Dec 29, 2025Updated 7 months ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆32Jun 18, 2026Updated last month
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last month
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆109Jun 25, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆40Jul 16, 2026Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- ☆42Oct 6, 2025Updated 10 months ago
- Post-verkko graph and assembly curation in Python.☆25Jul 2, 2026Updated last month
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆408Updated this week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 4 months ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆46Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- ☆42May 19, 2025Updated last year
- A complete diploid human genome☆156Updated this week
- ☆28May 12, 2026Updated 2 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆114Jul 23, 2024Updated 2 years ago
- ☆13May 27, 2025Updated last year
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 weeks ago
- Evaluating genome assemblies☆125Mar 3, 2026Updated 5 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 8 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- Constructing a pangenome gene graph☆210Aug 11, 2025Updated 11 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 2 months ago
- Genome Pair Rapid Dotter☆70Sep 2, 2021Updated 4 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆222Updated this week
- This is the standalone version of the EviAnn pipeline☆179Updated this week
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 10 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆259Jul 10, 2026Updated last month
- Fast and exact gap-affine partial order alignment☆70Apr 25, 2026Updated 3 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated 2 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- A tool for sniffing out the differences in vari-Ants☆45Apr 7, 2026Updated 4 months ago
- SRF: Satellite Repeat Finder☆107Jan 8, 2024Updated 2 years ago
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year