Alternatives and similar repositories for deeppolisher

Users that are interested in deeppolisher are comparing it to the libraries listed below

• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆82Updated last week
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆38Updated last week
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last week
• GeneDx / pgr-tk
  ☆101Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆93Updated 2 weeks ago
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆92Updated last month
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆45Updated 6 months ago
• marbl / Primates
  Complete assemblies of non-human primate genomes
  ☆56Updated 8 months ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆57Updated this week
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆59Updated 4 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated 2 years ago
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆56Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆54Updated 10 months ago
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆50Updated 2 years ago
• warp9seq / minimod
  A bioinformatics tool for viewing and calculating base modification frequencies from BAM files
  ☆40Updated last month
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• kjenike / panagram
  ☆68Updated last week
• epi2me-labs / wf-pore-c
  ☆48Updated 2 months ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆66Updated this week
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆37Updated 2 years ago
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆69Updated 2 months ago
• goldman-gp-ebi / BOSS-RUNS
  Dynamic, adaptive sampling during nanopore sequencing
  ☆37Updated this week
• lh3 / longdust
  Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
  ☆86Updated this week
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆71Updated 3 months ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆53Updated 10 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆90Updated last week
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆47Updated last month
• nf-core / pangenome
  Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.
  ☆102Updated 2 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆38Updated 2 months ago