Alternatives and similar repositories for deeppolisher

Users that are interested in deeppolisher are comparing it to the libraries listed below

• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆76Updated 5 months ago
• nanoporegenomics / napu_wf
  WDL workflows for variant calling and assembly using ONT
  ☆35Updated this week
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆83Updated last week
• jonassibbesen / rpvg
  Method for inferring path posterior probabilities and abundances from pangenome graph read alignments
  ☆57Updated this week
• epi2me-labs / wf-pore-c
  ☆43Updated 6 months ago
• DessimozLab / FastOMA
  FastOMA is a scalable software package to infer orthology relationship.
  ☆79Updated this week
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆97Updated last year
• PacificBiosciences / MethBat
  A battery of methylation tools for PacBio HiFi reads
  ☆40Updated last month
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 5 months ago
• GeneDx / pgr-tk
  ☆100Updated last year
• PacificBiosciences / sawfish
  Joint structural variant and copy number variant caller for HiFi sequencing data
  ☆59Updated this week
• dvdylus / read2tree
  ☆20Updated 3 years ago
• harvardinformatics / GenomeAnnotation
  Best practices and workflow for genome annotation
  ☆77Updated 4 months ago
• santiagosnchez / vcf2fasta
  Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file
  ☆51Updated last month
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated last month
• mcfrith / last-genome-alignments
  ☆64Updated 2 years ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆69Updated 6 months ago
• marbl / Primates
  Complete assemblies of non-human primate genomes
  ☆50Updated 3 months ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆38Updated last year
• bwa-mem2 / mm2-fast
  A versatile pairwise aligner for genomic and spliced nucleotide sequences
  ☆54Updated last year
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆79Updated 2 weeks ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆37Updated last month
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆27Updated 2 weeks ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆49Updated 5 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆80Updated 2 weeks ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last month
• vahidAK / NanoMethPhase
  Methylation Phasing for Nanopore Sequencing
  ☆48Updated 2 years ago
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago