PengNi / ccsmeth
Detecting DNA methylation from PacBio CCS reads
☆76Updated 3 months ago
Alternatives and similar repositories for ccsmeth:
Users that are interested in ccsmeth are comparing it to the libraries listed below
- Collection of tools for the analysis of CpG data☆77Updated 2 weeks ago
- ☆70Updated 4 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆114Updated 2 weeks ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆102Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Pangenome-based genome inference☆122Updated this week
- DNA序列比对结果 可视化展示工具☆45Updated 2 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆71Updated this week
- source code for EVM☆106Updated 2 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆83Updated 2 years ago
- Dfam Transposable Element Tools Docker container.☆88Updated 2 months ago
- Same species annotation lift over pipeline.☆96Updated last year
- Somatic structural variant caller for long-read data☆60Updated this week
- Neural network classification of TE☆87Updated 2 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆78Updated 2 years ago
- Genomic related tools☆71Updated 3 years ago
- ☆73Updated 7 months ago
- Research release basecalling models and configurations☆107Updated 8 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆95Updated 4 years ago
- A list of software for pangenomics☆100Updated this week
- GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…☆48Updated 4 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆96Updated last year
- A tool to identify, orient, trim and rescue full length cDNA reads☆81Updated 2 years ago
- NLR-Annotator upload☆63Updated last year
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆99Updated 3 years ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆86Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆96Updated 3 weeks ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆115Updated 4 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆111Updated 2 months ago
- accurate LiftOver tool for new genome assemblies☆119Updated 6 months ago