Detecting DNA methylation from PacBio CCS reads
☆83Apr 8, 2025Updated last year
Alternatives and similar repositories for ccsmeth
Users that are interested in ccsmeth are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Collection of tools for the analysis of CpG data☆111Jul 9, 2025Updated 11 months ago
- High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads☆13Apr 10, 2026Updated 2 months ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Call select base modifications in PacBio HiFi reads☆18May 29, 2026Updated last month
- ☆39Feb 22, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Transformer-based sequence correction method for genome assembly polishing☆104Mar 11, 2025Updated last year
- ☆44Dec 29, 2025Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- A battery of methylation tools for PacBio HiFi reads☆52Jun 2, 2026Updated last month
- ☆16Apr 9, 2021Updated 5 years ago
- A collection of softwares to handle and model PacBio kinetic signal data and predict epigenetics modifications.☆10Mar 4, 2024Updated 2 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- Make colorful identity heatmaps of genomic sequence☆139May 24, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The complete sequence of a Chinese individual☆13Oct 8, 2024Updated last year
- Genome Pair Rapid Dotter☆69Sep 2, 2021Updated 4 years ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- ☆42Oct 6, 2025Updated 8 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- Evaluating genome assemblies☆122Mar 3, 2026Updated 4 months ago
- ☆32Apr 7, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- PECAT, a phased error correct and assembly tool☆66Dec 8, 2025Updated 6 months ago
- ☆85Mar 3, 2025Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆43Nov 25, 2024Updated last year
- A genome completeness evaluation tool based on miniprot☆248Jun 20, 2026Updated 2 weeks ago
- k-mer based assembly evaluation☆346May 21, 2026Updated last month
- ☆52Jun 25, 2024Updated 2 years ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆112Nov 17, 2025Updated 7 months ago
- DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads☆62Mar 5, 2025Updated last year
- base-level dotplots from PAF alignments☆35Sep 18, 2025Updated 9 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆378Jun 25, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆139Jun 10, 2026Updated 3 weeks ago
- SRF: Satellite Repeat Finder☆105Jan 8, 2024Updated 2 years ago
- Evaluation and polishing workflows for T2T genome assemblies☆157Jun 26, 2026Updated last week
- Long read based human genomic structural variation detection with cuteSV☆290Mar 26, 2026Updated 3 months ago
- PacBio BAM toolkit☆52Feb 26, 2025Updated last year