Alternatives and similar repositories for rukki

Users that are interested in rukki are comparing it to the libraries listed below

• at-cg / RAFT
  Improved long-read assembly by preserving contained reads
  ☆30Updated last year
• marbl / anianns
  ANI based satellite annotation
  ☆23Updated 3 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆48Updated last year
• MoinSebi / gfa2bin
  ☆28Updated 6 months ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated last year
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 3 years ago
• davidebolo1993 / cosigt
  COsine SImilarity-based Genotyper using pangenomes
  ☆25Updated 2 weeks ago
• pangenome / gfalace
  lace up GFA files using panSN path name sub-ranges to coordinate the lacing
  ☆14Updated 6 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆27Updated 3 weeks ago
• logsdon-lab / CenMAP
  Centromere mapping and annotation pipeline
  ☆21Updated 3 weeks ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated 2 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• maickrau / ribotin
  ☆38Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 8 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• cumtr / PG-SCUnK
  PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers
  ☆23Updated last week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆31Updated 7 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 9 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆44Updated last year
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 4 years ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆30Updated 3 weeks ago
• marbl / training
  Genome Assembly 102
  ☆17Updated 9 months ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆26Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆43Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆25Updated 4 years ago
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆37Updated 3 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• alshai / vcf2msa
  convert a multi-sample VCF file to a multiple sequence alignment (C)
  ☆15Updated 6 years ago