marbl / rukkiLinks
Extracting paths from assembly graphs
☆24Updated last year
Alternatives and similar repositories for rukki
Users that are interested in rukki are comparing it to the libraries listed below
Sorting:
- ☆25Updated 2 months ago
- Statistics and analysis for variation graphs☆45Updated 9 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- COsine-based SImilarity Genotyper using pangenomes☆21Updated last week
- ☆28Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 10 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆40Updated 11 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Differential k-mer analysis☆37Updated last year
- ☆38Updated this week
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆19Updated last month
- ☆36Updated 2 months ago
- ☆17Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Genome Assembly 102☆14Updated 5 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 months ago
- FastK based version of Merqury☆28Updated 2 weeks ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- Phasing reads with secondary alignments☆20Updated 10 months ago
- Domain based annotation of transposable elements☆20Updated this week
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 4 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 9 months ago
- SV calling for diploid assemblies☆28Updated last year