Alternatives and similar repositories for rukki:

Users that are interested in rukki are comparing it to the libraries listed below

• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• marbl / training
  Genome Assembly 102
  ☆14Updated 2 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 5 months ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆23Updated last month
• davidebolo1993 / cosigt
  ☆15Updated last week
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 4 months ago
• at-cg / RAFT
  ☆22Updated 7 months ago
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆22Updated this week
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 9 months ago
• nadegeguiglielmoni / GraphUnzip
  Unzip assembly graphs with Hi-C data and/or long reads.
  ☆27Updated 6 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆22Updated 3 years ago
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆18Updated 7 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated 8 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆11Updated 2 years ago
• GTPB / CPANG22
  Computational Pangenomics
  ☆17Updated 2 years ago
• rlorigro / GFAse
  Tool for globally phasing diploid assembly graphs with orthogonal data
  ☆39Updated 3 months ago
• mrvollger / NucFreq
  ☆35Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆38Updated 3 months ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆36Updated last year
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 3 years ago
• HuiyangYu / TGSFilter
  TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming
  ☆21Updated 10 months ago
• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆18Updated 9 months ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated last year
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated this week
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month