PacificBiosciences / pb-CpG-toolsLinks
Collection of tools for the analysis of CpG data
☆82Updated 4 months ago
Alternatives and similar repositories for pb-CpG-tools
Users that are interested in pb-CpG-tools are comparing it to the libraries listed below
Sorting:
- Mapping pipeline for data generated using Arima-HiC☆77Updated last year
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- Pangenome-based genome inference☆127Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆80Updated 4 years ago
- Phased assembly variant caller☆116Updated 6 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆99Updated this week
- Tandem repeat genotyping and visualization from PacBio HiFi data☆117Updated last month
- This is the standalone version of the EviAnn pipeline☆89Updated last week
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- A list of software for pangenomics☆114Updated 3 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆117Updated last month
- ☆71Updated 5 years ago
- High-precision TE Annotator☆119Updated last week
- Genomic related tools☆70Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆95Updated 3 months ago
- ☆48Updated 9 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Same species annotation lift over pipeline.☆97Updated last year
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆70Updated 2 months ago
- Simple pileup-based variant caller☆90Updated last month
- Dfam Transposable Element Tools Docker container.☆91Updated last month
- Structural Variant Identification Method using Genome Assemblies☆117Updated 2 years ago
- A program for assessing the T2T genome continuity☆75Updated last month
- A novel genome assembly pipeline based on deep learning☆62Updated 6 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- NLR-Annotator upload☆66Updated last year
- Reference-free profiling of polyploid genomes☆116Updated 10 months ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆83Updated 3 years ago