Alternatives and similar repositories for pb-CpG-tools

Users that are interested in pb-CpG-tools are comparing it to the libraries listed below

• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆81Updated last year
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆129Updated last month
• EichlerLab / pav
  Phased assembly variant caller
  ☆130Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆152Updated last month
• starskyzheng / panpop
  Application of pan-genome for population
  ☆116Updated 2 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆85Updated 4 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆165Updated this week
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆130Updated 3 years ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆37Updated 4 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 7 months ago
• qjiangzhao / TEtrimmer
  TEtrimmer: a novel tool to automate manual curation of transposable elements
  ☆110Updated this week
• KolmogorovLab / Severus
  A tool for somatic structural variant calling using long reads
  ☆160Updated 2 months ago
• daewoooo / SVbyEye
  ☆144Updated 2 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆76Updated 2 years ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆133Updated this week
• lh3 / yak
  Yet another k-mer analyzer
  ☆156Updated last week
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆109Updated 11 months ago
• YaoZhou89 / TGG
  tomato graph pangenome
  ☆85Updated 3 years ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆85Updated 3 years ago
• twolinin / longphase
  ☆121Updated last month
• mrvollger / StainedGlass
  Make colorful identity heatmaps of genomic sequence
  ☆128Updated last year
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆101Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆146Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated 3 weeks ago
• CSU-KangHu / HiTE
  High-precision TE Annotator
  ☆146Updated last month
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆97Updated 3 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆203Updated 5 months ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆138Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆189Updated 8 months ago