Collection of tools for the analysis of CpG data
☆110Jul 9, 2025Updated 8 months ago
Alternatives and similar repositories for pb-CpG-tools
Users that are interested in pb-CpG-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Call select base modifications in PacBio HiFi reads☆16Mar 4, 2026Updated 3 weeks ago
- Detecting DNA methylation from PacBio CCS reads☆84Apr 8, 2025Updated 11 months ago
- A battery of methylation tools for PacBio HiFi reads☆50Dec 2, 2025Updated 3 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆136Dec 8, 2025Updated 3 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆48Oct 22, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Jan 20, 2026Updated 2 months ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 3 months ago
- Tools for fiberseq data written in rust.☆64Mar 18, 2026Updated last week
- TRGT Repeat expansion summary☆11Apr 10, 2023Updated 2 years ago
- A minimap2 frontend for PacBio native data formats☆211Mar 4, 2026Updated 3 weeks ago
- HiFi-based caller for highly similar paralogous genes☆62Mar 3, 2026Updated 3 weeks ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Methylatino phasing using PacBio CCS reads☆14Dec 13, 2024Updated last year
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- pbsv - PacBio structural variant (SV) calling and analysis tools☆165Feb 26, 2025Updated last year
- ☆39Feb 22, 2023Updated 3 years ago
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Sep 27, 2023Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆72Nov 4, 2025Updated 4 months ago
- ☆37Feb 22, 2023Updated 3 years ago
- ☆31Feb 14, 2026Updated last month
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆70Mar 23, 2025Updated last year
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆38Mar 6, 2026Updated 3 weeks ago
- ☆84Mar 3, 2025Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- A complete diploid human genome☆145Mar 9, 2026Updated 2 weeks ago
- ☆38Oct 6, 2025Updated 5 months ago
- Methylation/modified base calling separated from basecalling.☆185Sep 17, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Make colorful identity heatmaps of genomic sequence☆128May 24, 2024Updated last year
- ☆38Dec 29, 2025Updated 3 months ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆179Oct 20, 2024Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆384Mar 11, 2026Updated 2 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69May 22, 2021Updated 4 years ago
- A bioinformatics tool for working with modified bases☆257Jan 19, 2026Updated 2 months ago