Consensus genome annotation using OMA
☆31Jan 14, 2026Updated 2 months ago
Alternatives and similar repositories for OMAnnotator
Users that are interested in OMAnnotator are comparing it to the libraries listed below
Sorting:
- ☆13May 27, 2025Updated 9 months ago
- Tools for working with agp files☆19Jun 26, 2025Updated 8 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆123Feb 24, 2026Updated 3 weeks ago
- Improved long-read assembly by preserving contained reads☆30Aug 22, 2024Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆58Jan 7, 2026Updated 2 months ago
- This is the standalone version of the EviAnn pipeline☆142Mar 13, 2026Updated last week
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆18Updated this week
- Convert HAL to VG☆23Aug 12, 2024Updated last year
- T2Tools is a toolset contains several tools for T2T assembly, and it is under development.☆15Sep 17, 2025Updated 6 months ago
- A chromosomal visualization package for python.☆15Nov 21, 2023Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆236Sep 18, 2025Updated 6 months ago
- A novel genome assembly pipeline based on deep learning☆69Dec 2, 2024Updated last year
- Multi-genome synteny block visualization tool☆55Updated this week
- ☆38Oct 6, 2025Updated 5 months ago
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Genome Assembly 102☆17Apr 23, 2025Updated 10 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Convert Tandem Repeat Finder dat file output into gff3 format☆31Nov 9, 2025Updated 4 months ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 3 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 10 months ago
- (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software☆10Jul 19, 2024Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆93Mar 4, 2026Updated 2 weeks ago
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆148Jan 27, 2025Updated last year
- The tools are used for displaying hic signal of genome☆25Jan 4, 2021Updated 5 years ago
- Tandem repeat genotyping with long reads☆35Sep 23, 2025Updated 5 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Mar 5, 2026Updated 2 weeks ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- source code for EVM☆122Nov 29, 2024Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- This is a method to find telomeres and centromeres in plants.☆42Jun 17, 2023Updated 2 years ago