mktle / colorSVLinks
somatic SV calling on matched tumor-normal co-assembly graphs
☆22Updated last year
Alternatives and similar repositories for colorSV
Users that are interested in colorSV are comparing it to the libraries listed below
Sorting:
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- ☆19Updated last week
- ☆38Updated 2 months ago
- SV calling for diploid assemblies☆30Updated last year
- ☆38Updated 5 months ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆42Updated last year
- ☆19Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- Very simple and configurable all-in-one dotplot program☆14Updated 2 years ago
- ☆31Updated 7 months ago
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- ☆31Updated 6 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- ☆39Updated 2 years ago
- ☆21Updated 10 months ago
- FastK based version of Merqury☆30Updated 3 months ago
- Statistics and analysis for variation graphs☆47Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- Topsicle utilizes abundance of telomere pattern k-mers to estimate telomere length in long read.☆17Updated 3 months ago
- Phased structural variant discovery in pangenomes☆39Updated 3 weeks ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 10 months ago
- Phasing reads with secondary alignments☆21Updated last year
- Extracting paths from assembly graphs☆24Updated last year
- Tandem repeat genotyping with long reads☆33Updated 3 months ago
- ☆44Updated last year