mktle / colorSV
somatic SV calling on matched tumor-normal co-assembly graphs
☆18Updated 8 months ago
Alternatives and similar repositories for colorSV:
Users that are interested in colorSV are comparing it to the libraries listed below
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 4 months ago
- SV calling for diploid assemblies☆26Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆30Updated 5 years ago
- ☆16Updated 11 months ago
- ☆35Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 6 months ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆34Updated 4 months ago
- FastK based version of Merqury☆23Updated 2 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 3 months ago
- ☆28Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- Very simple and configurable all-in-one dotplot program☆12Updated 2 years ago
- ☆34Updated 2 years ago
- ☆32Updated this week
- Statistics and analysis for variation graphs☆39Updated 3 months ago
- ☆16Updated last month
- Extracting paths from assembly graphs☆22Updated 11 months ago
- Draw a dot plot from a paf alignment☆26Updated 3 months ago
- ☆22Updated 7 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 2 weeks ago
- A Hi-C scaffolding method☆23Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆14Updated 9 months ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- ☆17Updated 3 weeks ago
- ☆29Updated 2 months ago