mktle / colorSVLinks
somatic SV calling on matched tumor-normal co-assembly graphs
☆22Updated 10 months ago
Alternatives and similar repositories for colorSV
Users that are interested in colorSV are comparing it to the libraries listed below
Sorting:
- SV calling for diploid assemblies☆27Updated last year
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 7 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago
- ☆17Updated last year
- ☆35Updated this week
- ☆35Updated last year
- ☆30Updated 5 years ago
- Kmer Analysis of Pileups for Genotyping☆30Updated this week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- ☆29Updated last month
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆21Updated 3 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated last week
- Statistics and analysis for variation graphs☆40Updated 6 months ago
- FastK based version of Merqury☆25Updated 2 weeks ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆20Updated last week
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 6 months ago
- Draw a dot plot from a paf alignment☆30Updated 2 months ago
- General purpose utility related to GAF files☆28Updated 3 weeks ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- ☆35Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Computational Pangenomics☆17Updated 3 years ago
- Variant annotation and merging pipeline☆36Updated 3 weeks ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated 2 weeks ago
- Tumor-normal variant calling workflow using HiFi reads☆20Updated last month
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago