mktle / colorSV
somatic SV calling on matched tumor-normal co-assembly graphs
☆18Updated 5 months ago
Alternatives and similar repositories for colorSV:
Users that are interested in colorSV are comparing it to the libraries listed below
- Tool for globally phasing diploid assembly graphs with orthogonal data☆39Updated 2 months ago
- SV calling for diploid assemblies☆23Updated 10 months ago
- ☆35Updated 10 months ago
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- ☆31Updated 5 years ago
- ☆14Updated 9 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 4 months ago
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 5 years ago
- Statistics and analysis for variation graphs☆33Updated last month
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated last month
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- assembly evaluation tool☆34Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆30Updated 2 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 months ago
- ☆31Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 7 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Updated 2 years ago
- Variant annotation and merging pipeline☆31Updated 3 weeks ago
- FastK based version of Merqury☆22Updated last month
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 3 years ago
- ☆34Updated last year
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Computational Pangenomics☆17Updated 2 years ago
- ☆28Updated 6 months ago
- Tumour-only somatic mutation calling using long reads☆25Updated 3 months ago
- De novo tandem repeat calling from PacBio HiFi data☆15Updated 3 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- ☆29Updated 3 weeks ago
- Draw a dot plot from a paf alignment☆25Updated last month
- Identification of transposable element families from pangenome polymorphisms☆43Updated 5 months ago