☆12Oct 13, 2021Updated 4 years ago
Alternatives and similar repositories for GeneVar
Users that are interested in GeneVar are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated 11 months ago
- ☆11Dec 9, 2022Updated 3 years ago
- ☆85Mar 3, 2025Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆62Sep 15, 2025Updated 8 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Nov 5, 2020Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆34Aug 18, 2025Updated 9 months ago
- ☆17Aug 8, 2025Updated 10 months ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 10 months ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆10Jul 14, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Copy number caller for long read data including SNV utilization☆69Mar 31, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 5 months ago
- Kmer Analysis of Pileups for Genotyping☆39Mar 6, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- ☆35Feb 20, 2020Updated 6 years ago
- A tool for motif annotation and visualization in tandem repeats.☆14May 26, 2025Updated last year
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆23Jan 23, 2026Updated 4 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30May 25, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Post-verkko graph and assembly curation in Python.☆19Jun 3, 2026Updated last week
- ☆19Oct 20, 2025Updated 7 months ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆35Mar 4, 2026Updated 3 months ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆43Apr 16, 2026Updated last month
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year