collaborativebioinformatics / GeneVar
☆12Updated 3 years ago
Alternatives and similar repositories for GeneVar:
Users that are interested in GeneVar are comparing it to the libraries listed below
- Functions to compare a SV call sets against a truth set.☆29Updated 10 months ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- ☆16Updated last month
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 5 months ago
- Benchmarking variant calling in polyploids☆13Updated 3 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- Kmer Analysis of Pileups for Genotyping☆21Updated last month
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 11 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Unfazed by genomic variant phasing☆26Updated 9 months ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Benchmark structural variant calls against a reference set☆17Updated 4 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- comparative genome dot plot viewer☆9Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆30Updated 3 years ago
- ☆13Updated last year
- ☆20Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- ☆11Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Identification of segmental duplications in the genome☆26Updated 3 years ago