collaborativebioinformatics / GeneVarLinks
☆12Updated 3 years ago
Alternatives and similar repositories for GeneVar
Users that are interested in GeneVar are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated 2 months ago
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- ☆13Updated 3 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- ☆16Updated 7 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 2 weeks ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆11Updated 2 years ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆20Updated 5 months ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year