collaborativebioinformatics / GeneVarLinks
☆12Updated 3 years ago
Alternatives and similar repositories for GeneVar
Users that are interested in GeneVar are comparing it to the libraries listed below
Sorting:
- Functions to compare a SV call sets against a truth set.☆30Updated last week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 5 years ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆9Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆11Updated 2 years ago
- Run multiple programs to check if a VCF is usable☆11Updated 5 years ago
- ☆16Updated 5 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Split a BAM file by haplotype support☆16Updated 7 years ago
- ☆13Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Updated 3 years ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Hidden Markov Model based Copy number caller☆20Updated 8 months ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 6 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Automation of pipelines that depend on preexisting assembly, polishing, and alignment tools. Performance evaluation and visualization of …☆14Updated 5 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- A long-read analysis toolbox for cancer and population genomics☆23Updated 4 months ago
- Working space for the GIAB TR benchmarking project☆21Updated 8 months ago
- Phasing reads with secondary alignments☆18Updated 6 months ago
- ☆14Updated last year
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆20Updated last year
- A python wrapper around SURVIVOR☆20Updated last year
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 9 months ago