LongcallR is a SNP caller for single molecule long-read RNA-seq data
☆73Mar 16, 2026Updated last week
Alternatives and similar repositories for longcallR
Users that are interested in longcallR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A local-haplotagging-based small and structural variant caller☆96Mar 11, 2026Updated 2 weeks ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- Scoring GT/AG sites for improving spliced alignment☆52Nov 10, 2025Updated 4 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆82Jan 20, 2026Updated 2 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- SV detection tool for nanopore sequence reads☆97Mar 15, 2026Updated last week
- bioinformatics toolkit in rust☆101Feb 15, 2026Updated last month
- long read RNA-seq quantification☆106Mar 16, 2026Updated last week
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆40Dec 23, 2025Updated 3 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆71Mar 18, 2026Updated last week
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 7 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Apr 23, 2025Updated 11 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆54Mar 5, 2025Updated last year
- Simple pileup-based variant caller☆95Apr 25, 2025Updated 11 months ago
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- vcfdist: Accurately benchmarking phased variant calls☆85Feb 23, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- A bioinformatics tool for viewing and calculating base modification frequencies from BAM files☆42Updated this week
- ☆13May 27, 2025Updated 9 months ago
- A tool for somatic structural variant calling using long reads☆166Mar 12, 2026Updated 2 weeks ago
- Constructing a pangenome gene graph☆205Aug 11, 2025Updated 7 months ago
- Kmer Analysis of Pileups for Genotyping☆37Mar 6, 2026Updated 2 weeks ago
- Easy genomic regions for short-read variant calling☆45Sep 10, 2025Updated 6 months ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Oct 7, 2023Updated 2 years ago
- ☆125Feb 22, 2026Updated last month
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆25Feb 18, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Long-read splice alignment with high accuracy☆64Sep 26, 2024Updated last year
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 9 months ago
- Integrating long read sequencing enhances short read-based locus-specific transposable element quantification☆10May 12, 2025Updated 10 months ago
- BWT construction and search☆126Jan 14, 2026Updated 2 months ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- A complete diploid human genome☆145Mar 9, 2026Updated 2 weeks ago
- General purpose utility related to GAF files☆29Jan 27, 2026Updated last month