huangnengCSU / longcallRLinks
LongcallR is a SNP caller for single molecule long-read RNA-seq data
☆63Updated 2 weeks ago
Alternatives and similar repositories for longcallR
Users that are interested in longcallR are comparing it to the libraries listed below
Sorting:
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated 2 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 10 months ago
- Long-read splice alignment with high accuracy☆64Updated 11 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆62Updated 10 months ago
- python plotly Circos from VCF☆38Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆48Updated 5 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Human reference genome analysis sets☆53Updated 2 years ago
- ☆23Updated 4 months ago
- Scoring GT/AG sites for improving spliced alignment☆45Updated last month
- CAncer Standards Long-read Evaluation☆28Updated 6 months ago
- Simple library/pipeline to generate and handle Hi-C data.☆38Updated 9 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated 3 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 11 months ago
- The Flexible Demultiplexer☆34Updated this week
- Improving gene isoform quantification with miniQuant☆24Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- ☆36Updated 2 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆23Updated last month
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 2 weeks ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆45Updated last month
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆35Updated 6 years ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated last year
- ☆34Updated last year
- Easy genomic regions for short-read variant calling☆35Updated 2 weeks ago