huangnengCSU / longcallR
LongcallR is a small variant caller for single molecule long-read RNA-seq data
☆41Updated last month
Related projects ⓘ
Alternatives and complementary repositories for longcallR
- Set of tools to manipulate and visualize modified base bam files☆48Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated 2 months ago
- ☆21Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 3 weeks ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆22Updated 5 months ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆20Updated last year
- ☆33Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆33Updated 4 months ago
- An insertion caller for Illumina paired-end WGS data.☆22Updated 3 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated 3 weeks ago
- Metacompore is a snakemake pipeline running multiple RNA modifications detection tools for nanopore directRNA sequencing☆9Updated 3 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 7 months ago
- Immuological gene typing and annotation for genome assembly☆31Updated 3 weeks ago
- Reconstruction of focal amplifications with long reads☆12Updated this week
- The Flexible Demultiplexer☆26Updated last month
- ☆15Updated 2 years ago
- Tumour-only somatic mutation calling using long reads☆24Updated last week
- GENE-SWitCH project RNA-Seq analysis pipeline☆23Updated 5 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆23Updated 2 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆17Updated last year
- ☆24Updated last month
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 5 months ago
- ☆29Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆48Updated last month