PacificBiosciences / MethBat
A battery of methylation tools for PacBio HiFi reads
☆34Updated last month
Alternatives and similar repositories for MethBat:
Users that are interested in MethBat are comparing it to the libraries listed below
- Call select base modifications in PacBio HiFi reads☆7Updated 3 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated 5 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆54Updated 2 years ago
- ☆43Updated 8 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆36Updated 3 weeks ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆41Updated 6 months ago
- Error correction of ONT transcript reads☆58Updated last year
- Variant annotation and merging pipeline☆33Updated last month
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆37Updated 10 months ago
- ☆61Updated last month
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Simple pileup-based variant caller☆89Updated last week
- ☆30Updated 8 months ago
- ☆32Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- ☆76Updated 4 years ago
- ☆29Updated 4 months ago
- Show pangenome graphs in an easy way☆55Updated 2 years ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- A tool for evaluate long-read de novo assembly results☆46Updated 8 months ago
- ☆36Updated last year
- SV calling for diploid assemblies☆27Updated last year
- TSEBRA: Transcript Selector for BRAKER☆47Updated 5 months ago