Alternatives and similar repositories for best

Users that are interested in best are comparing it to the libraries listed below

• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆140Updated 2 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆102Updated 7 months ago
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆92Updated last month
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆164Updated last week
• GeneDx / pgr-tk
  ☆101Updated last year
• varlociraptor / varlociraptor
  Flexible, uncertainty-aware variant calling with parameter free filtration via FDR control.
  ☆130Updated this week
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆114Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆84Updated 2 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆87Updated 2 months ago
• marbl / HG002
  A complete diploid human genome
  ☆137Updated last month
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆74Updated this week
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆107Updated last month
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆92Updated last week
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆115Updated 8 months ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆67Updated last week
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated last month
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆111Updated last month
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆95Updated 4 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆100Updated last year
• PacificBiosciences / HiPhase
  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
  ☆80Updated 7 months ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆81Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆117Updated last month
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆45Updated 3 weeks ago
• fiberseq / fibertools-rs
  Tools for fiberseq data written in rust.
  ☆62Updated last week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆124Updated 2 months ago
• mlafave / sam2pairwise
  sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.
  ☆44Updated 10 years ago
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆131Updated last month
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆122Updated last month