Alternatives and similar repositories for best

Users that are interested in best are comparing it to the libraries listed below

• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• stjude-rust-labs / fq
  Command line utility for manipulating Illumina-generated FASTQ files.
  ☆87Updated 3 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆85Updated last month
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆84Updated 2 weeks ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆129Updated 4 months ago
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆151Updated 2 months ago
• marbl / HG002
  A complete diploid human genome
  ☆120Updated 4 months ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• jackh726 / bigtools
  A high-performance BigWig and BigBed library in Rust
  ☆90Updated last week
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆99Updated last year
• wdecoster / nanocomp
  Comparison of multiple long read datasets
  ☆132Updated 3 weeks ago
• waveygang / wfmash
  base-accurate DNA sequence alignments using WFA and mashmap3
  ☆189Updated 2 weeks ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• nf-core / hic
  Analysis of Chromosome Conformation Capture data (Hi-C)
  ☆99Updated this week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆150Updated 2 years ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆99Updated last week
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆188Updated 2 weeks ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated last month
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 2 years ago
• wdecoster / methplotlib
  Plotting tools for nanopore methylation data
  ☆93Updated last year
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆80Updated 7 months ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆79Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆104Updated this week
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆116Updated 4 months ago
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆66Updated this week
• pjedge / longshot
  diploid SNV caller for error-prone reads
  ☆199Updated last year
• dpryan79 / MethylDackel
  A (mostly) universal methylation extractor for BS-seq experiments.
  ☆170Updated 11 months ago
• bcgsc / RNA-Bloom
  reference-free transcriptome assembly for short and long reads
  ☆105Updated last year