Transfer HiFi read mappings from their own assembly contigs to a standard reference
☆38Dec 30, 2025Updated 3 months ago
Alternatives and similar repositories for portello
Users that are interested in portello are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool for sniffing out the differences in vari-Ants☆40Apr 7, 2026Updated last week
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 7 months ago
- ☆67Apr 9, 2024Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated 11 months ago
- Simple pileup-based variant caller☆95Apr 25, 2025Updated 11 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 11 months ago
- A battery of methylation tools for PacBio HiFi reads☆51Dec 2, 2025Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Dec 20, 2023Updated 2 years ago
- Structural Variant Identification Method using Genome Assemblies☆140Sep 16, 2022Updated 3 years ago
- drunk on perbase pileups and lua expressions☆19Nov 15, 2025Updated 5 months ago
- plane sweep filtering genome alignments☆23Mar 30, 2026Updated 2 weeks ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- A multiscale pangenome browser☆29Updated this week
- ☆46Nov 21, 2025Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- KmerCamel🐫 provides implementations of several algorithms for efficiently representing a set of k-mers as a masked superstring.☆20Updated this week
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 3 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 10 months ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 11 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆23Apr 25, 2024Updated last year
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 3 months ago
- ☆59Dec 12, 2023Updated 2 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆83Jan 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Jul 27, 2023Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 2 years ago
- Singular Genomics Demultiplexing Tool☆16Mar 5, 2024Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- Python package for detecting positive selective sweeps using time-series genomics sampling data.☆19Apr 9, 2024Updated 2 years ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆75Nov 4, 2025Updated 5 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year
- ☆18Jan 29, 2025Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆38Nov 19, 2024Updated last year
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆30Nov 23, 2025Updated 4 months ago
- Haplotype phaser for next-generation sequencing data☆13Jan 13, 2022Updated 4 years ago
- The complete sequence of a Chinese individual☆12Oct 8, 2024Updated last year
- ☆119Oct 10, 2025Updated 6 months ago