dnanexus-rnd / GLnexusLinks
Scalable gVCF merging and joint variant calling for population sequencing projects
☆158Updated last year
Alternatives and similar repositories for GLnexus
Users that are interested in GLnexus are comparing it to the libraries listed below
Sorting:
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated last year
- phasing and Allele Specific Expression from RNA-seq☆115Updated 10 months ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- ABRA2☆92Updated 2 years ago
- Bayesian genotyper for structural variants☆133Updated 4 years ago
- ☆82Updated 6 years ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated last month
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 4 months ago
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- A structural variation pipeline for short-read sequencing☆188Updated this week
- Structural variation and indel detection by local assembly☆246Updated last week
- ☆120Updated 6 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Population-scale genotyping using pangenome graphs☆182Updated 4 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆161Updated 9 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 5 months ago
- ☆90Updated 3 years ago
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- VarDict☆200Updated last year
- Tandem repeat genotyping and visualization from PacBio HiFi data☆117Updated last month
- A tool for somatic structural variant calling using long reads☆134Updated last month
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆127Updated last year