dnanexus-rnd / GLnexus
Scalable gVCF merging and joint variant calling for population sequencing projects
☆158Updated last year
Alternatives and similar repositories for GLnexus:
Users that are interested in GLnexus are comparing it to the libraries listed below
- VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.☆97Updated 11 months ago
- ABRA2☆92Updated 2 years ago
- Tools for processing and analyzing structural variants.☆151Updated 3 years ago
- Bayesian genotyper for structural variants☆131Updated 4 years ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Structural variation and indel detection by local assembly☆245Updated last month
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- ☆120Updated 6 months ago
- Jasmine: SV Merging Across Samples☆211Updated 4 months ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆126Updated last year
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆79Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- VarDict☆198Updated last year
- De novo assembly based variant calling pipeline for Illumina short reads☆108Updated 4 years ago
- A tool for somatic structural variant calling using long reads☆128Updated last week
- A tool set for short variant discovery in genetic sequence data.☆196Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆101Updated 4 years ago
- Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium…☆79Updated 2 years ago
- Population-scale genotyping using pangenome graphs☆180Updated 3 months ago
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- BAM Statistics, Feature Counting and Annotation☆149Updated 2 months ago
- Graph realignment tools for structural variants☆156Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆158Updated 2 years ago
- Software program for checking sample matching for NGS data☆130Updated 10 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- Platypus Variant Caller☆108Updated 10 months ago
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆203Updated 4 years ago