Alternatives and similar repositories for GLnexus:

Users that are interested in GLnexus are comparing it to the libraries listed below

• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆150Updated 2 years ago
• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆96Updated 9 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆128Updated 4 years ago
• mozack / abra2
  ABRA2
  ☆92Updated 2 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆112Updated 7 months ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆197Updated 3 years ago
• gymreklab / GangSTR
  A tool for profiling long STRs from short reads
  ☆95Updated 3 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆157Updated 6 months ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• nanoporetech / pipeline-structural-variation
  Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
  ☆114Updated 3 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆194Updated last year
• ewels / AWS-iGenomes
  Documentation and description of AWS iGenomes S3 resource.
  ☆110Updated 3 months ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆104Updated 4 years ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆96Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆207Updated 2 months ago
• parklab / bamsnap
  ☆120Updated 4 months ago
• walaj / SeqLib
  C++ htslib/bwa-mem/fermi interface for interrogating sequence data
  ☆137Updated 7 months ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆242Updated 3 months ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 9 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆114Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆182Updated this week
• brentp / jigv
  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
  ☆126Updated last year
• imgag / ClinCNV
  Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
  ☆82Updated last month
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆67Updated 6 months ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆72Updated 3 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆78Updated 11 months ago