dnanexus-rnd / GLnexusView external linksLinks
Scalable gVCF merging and joint variant calling for population sequencing projects
☆175Apr 12, 2024Updated last year
Alternatives and similar repositories for GLnexus
Users that are interested in GLnexus are comparing it to the libraries listed below
Sorting:
- Plot structural variant signals from many BAMs and CRAMs☆558Jul 13, 2024Updated last year
- Jasmine: SV Merging Across Samples☆240Dec 20, 2024Updated last year
- Structural variant toolkit for VCFs☆397Jan 23, 2026Updated 3 weeks ago
- Structural variation and indel detection by local assembly☆251Sep 16, 2025Updated 4 months ago
- Population-scale genotyping using pangenome graphs☆195Jan 9, 2025Updated last year
- Toolset for SV simulation, comparison and filtering☆411Dec 1, 2023Updated 2 years ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆330Sep 25, 2025Updated 4 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆331May 27, 2025Updated 8 months ago
- structural variant calling and genotyping with existing tools, but, smoothly.☆263Jun 17, 2024Updated last year
- PEPPER-Margin-DeepVariant☆257Jan 12, 2024Updated 2 years ago
- Structural variation caller using third generation sequencing☆634Dec 18, 2025Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Jun 6, 2021Updated 4 years ago
- Graph realignment tools for structural variants☆165Dec 8, 2022Updated 3 years ago
- Bayesian haplotype-based mutation calling☆323Updated this week
- Sequence-to-graph mapper and graph generator☆470Aug 11, 2025Updated 6 months ago
- Toolkit for calling structural variants using short or long reads☆115Updated this week
- annotate a VCF with other VCFs/BEDs/tabixed files☆396Aug 30, 2025Updated 5 months ago
- ☆284Dec 29, 2025Updated last month
- Transformer-based sequence correction method for genome assembly polishing☆98Mar 11, 2025Updated 11 months ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Read-based phasing of genomic variants, also called haplotype assembly☆404Dec 31, 2025Updated last month
- Long read based human genomic structural variation detection with cuteSV☆278Sep 30, 2025Updated 4 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Jan 30, 2026Updated 2 weeks ago
- Segmental Duplication Assembler (SDA).☆43May 7, 2023Updated 2 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆817Nov 6, 2025Updated 3 months ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆255Mar 11, 2025Updated 11 months ago
- A tool for estimating repeat sizes☆206Jan 30, 2024Updated 2 years ago
- Structural variant detection and association testing☆108Feb 2, 2023Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- Tools for the analysis of structural variation in genomes☆81Mar 25, 2024Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆307Mar 18, 2024Updated last year
- The next version of bwa-mem☆816Oct 15, 2025Updated 4 months ago
- Long read / genome alignment software☆311Dec 16, 2025Updated last month
- Haplotype VCF comparison tools☆455Dec 7, 2023Updated 2 years ago
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated 10 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆507Nov 6, 2025Updated 3 months ago