Scalable gVCF merging and joint variant calling for population sequencing projects
☆179Apr 12, 2024Updated last year
Alternatives and similar repositories for GLnexus
Users that are interested in GLnexus are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Jasmine: SV Merging Across Samples☆244Dec 20, 2024Updated last year
- Plot structural variant signals from many BAMs and CRAMs☆562Jul 13, 2024Updated last year
- Structural variation and indel detection by local assembly☆254Mar 17, 2026Updated last week
- Toolset for SV simulation, comparison and filtering☆414Dec 1, 2023Updated 2 years ago
- Structural variant toolkit for VCFs☆401Mar 21, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- Population-scale genotyping using pangenome graphs☆197Jan 9, 2025Updated last year
- PEPPER-Margin-DeepVariant☆258Jan 12, 2024Updated 2 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆334May 27, 2025Updated 10 months ago
- Clair3 - Symphonizing pileup and full-alignment for deep learning-based long-read variant calling☆344Updated this week
- Bayesian haplotype-based mutation calling☆323Feb 13, 2026Updated last month
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆108Jun 6, 2021Updated 4 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- Structural variation caller using third generation sequencing☆641Mar 10, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Sequence-to-graph mapper and graph generator☆473Aug 11, 2025Updated 7 months ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆212Mar 20, 2026Updated last week
- Transformer-based sequence correction method for genome assembly polishing☆100Mar 11, 2025Updated last year
- Long read based human genomic structural variation detection with cuteSV☆281Updated this week
- Read-based phasing of genomic variants, also called haplotype assembly☆409Dec 31, 2025Updated 2 months ago
- Flexible genotype query among 30,000+ samples whole-genome☆94Sep 4, 2019Updated 6 years ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆833Feb 10, 2026Updated last month
- Graph realignment tools for structural variants☆166Dec 8, 2022Updated 3 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Toolkit for calling structural variants using short or long reads☆115Mar 7, 2026Updated 3 weeks ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated last month
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 2 years ago
- Long read / genome alignment software☆312Dec 16, 2025Updated 3 months ago
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago
- ☆286Dec 29, 2025Updated 3 months ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆399Aug 30, 2025Updated 6 months ago
- A tool for estimating repeat sizes☆207Jan 30, 2024Updated 2 years ago
- Haplotype VCF comparison tools☆460Dec 7, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆508Feb 26, 2026Updated last month
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) …☆256Mar 11, 2025Updated last year
- The next version of bwa-mem☆825Oct 15, 2025Updated 5 months ago
- A method for variant graph genotyping based on exact alignment of k-mers☆87Apr 1, 2019Updated 6 years ago
- fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"☆306Nov 14, 2025Updated 4 months ago
- A minimap2 frontend for PacBio native data formats☆211Mar 4, 2026Updated 3 weeks ago