dnanexus-rnd / GLnexus

Related projects ⓘ

Alternatives and complementary repositories for GLnexus

• Griffan / VerifyBamID
  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
  ☆94Updated 6 months ago
• mozack / abra2
  ABRA2
  ☆91Updated last year
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆126Updated 3 years ago
• atks / vt
  A tool set for short variant discovery in genetic sequence data.
  ☆192Updated 3 years ago
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆150Updated 2 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆101Updated 3 years ago
• Illumina / ExpansionHunterDenovo
  A suite of tools for detecting expansions of short tandem repeats
  ☆80Updated last year
• CCDG / Pipeline-Standardization
  ☆81Updated 5 years ago
• Illumina / Pisces
  Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.
  ☆96Updated 2 years ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆181Updated 2 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 4 months ago
• genome-in-a-bottle / giab_latest_release
  This repository contains information about latest release from Genome in a Bottle project
  ☆73Updated 5 years ago
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• zstephens / neat-genreads
  NEAT read simulation tools
  ☆95Updated 2 years ago
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆172Updated this week
• AstraZeneca-NGS / VarDict
  VarDict
  ☆187Updated 10 months ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆102Updated 4 years ago
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆170Updated 8 months ago
• parklab / bamsnap
  ☆111Updated 2 weeks ago
• PacificBiosciences / DevNet
  The DevNet project on github stores the PacBio DevNet website.
  ☆115Updated 6 years ago
• nhansen / SVanalyzer
  Tools for the analysis of structural variation in genomes
  ☆77Updated 7 months ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆152Updated 3 months ago
• svviz / svviz
  Read visualizer for structural variants
  ☆81Updated 6 years ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆126Updated 5 months ago
• parklab / xTea
  Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
  ☆102Updated 4 months ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆237Updated this week
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 5 years ago
• statgen / bamUtil
  ☆89Updated 2 years ago
• KCCG / ClinSV
  Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data
  ☆66Updated 2 months ago