PacificBiosciences / trgt-denovoLinks
De novo tandem repeat calling from PacBio HiFi data
☆18Updated 2 months ago
Alternatives and similar repositories for trgt-denovo
Users that are interested in trgt-denovo are comparing it to the libraries listed below
Sorting:
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 11 months ago
- Very simple and configurable all-in-one dotplot program☆13Updated 2 years ago
- Tandem repeat genotyping with long reads☆30Updated 3 months ago
- SV calling for diploid assemblies☆28Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- ☆21Updated 6 months ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆30Updated 4 months ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated 8 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated last month
- ☆17Updated last year
- ☆37Updated last year
- Detect and phase minor SNVs from long-read sequencing data☆13Updated 3 years ago
- General purpose utility related to GAF files☆29Updated 2 weeks ago
- ☆21Updated this week
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- ☆14Updated last year
- ☆31Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- ☆30Updated 3 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆17Updated 3 weeks ago
- Ploidy agnostic phasing pipeline and algorithm☆46Updated last year
- Genome Assembly 102☆15Updated 4 months ago