PacificBiosciences / trgt-denovo
De novo tandem repeat calling from PacBio HiFi data
☆12Updated 2 weeks ago
Related projects: ⓘ
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- A module for improving the insertion sequences of structural variant calls☆28Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆16Updated last month
- SV calling for diploid assemblies☆23Updated 5 months ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆26Updated 3 months ago
- Tandem repeat genotyping with long reads☆20Updated 2 weeks ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- Tumor-normal variant calling workflow using HiFi reads☆12Updated 3 weeks ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆22Updated 2 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆18Updated last week
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆22Updated this week
- Variant annotation and merging pipeline☆26Updated 3 weeks ago
- Statistics and analysis for variation graphs☆30Updated last month
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- ☆12Updated 5 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 3 months ago
- Kmer based genotyper for short reads.☆23Updated 2 years ago
- FastK based version of Merqury☆18Updated last week
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆23Updated 4 months ago
- A long-read analysis toolbox for cancer and population genomics☆19Updated 6 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆31Updated 4 years ago
- ☆30Updated last year
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- ☆45Updated 2 months ago
- ☆26Updated 6 months ago
- A K-mer classifier for HiFi reads☆8Updated 7 months ago