De novo tandem repeat calling from PacBio HiFi data
☆19Oct 1, 2026Updated last month
Alternatives and similar repositories for trgt-denovo
Users that are interested in trgt-denovo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tandem repeat genotyping and visualization from PacBio HiFi data☆145Jun 10, 2026Updated 4 months ago
- HiFi-based caller for highly similar paralogous genes☆78Sep 25, 2026Updated last month
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆51Oct 22, 2024Updated 2 years ago
- TRGT Repeat expansion summary☆10Apr 10, 2023Updated 3 years ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆20Oct 30, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads☆88Oct 28, 2026Updated last week
- A method to locate variation clusters☆11Nov 27, 2025Updated 11 months ago
- Tandem repeat genotyping with long reads☆41Sep 23, 2025Updated last year
- A phase-aware pharmacogenomic diplotyper for PacBio datasets☆27Oct 30, 2026Updated last week
- ☆24Feb 22, 2023Updated 3 years ago
- Collection of tools for the analysis of CpG data☆115Jul 9, 2025Updated last year
- ☆24Jul 15, 2026Updated 3 months ago
- VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing☆10Sep 8, 2026Updated last month
- Short Tandem Repeat disease loci resource☆30Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆23Jul 23, 2026Updated 3 months ago
- An HLA star-calling tool for PacBio HiFi data types☆23Feb 26, 2025Updated last year
- ☆19Jul 15, 2026Updated 3 months ago
- ☆12Apr 18, 2022Updated 4 years ago
- PHasing Reads in Areas Of Homozygosity☆14Feb 12, 2025Updated last year
- A tool for motif annotation and visualization in tandem repeats.☆15Oct 23, 2026Updated 2 weeks ago
- A tool for sniffing out the differences in vari-Ants☆60Oct 30, 2026Updated last week
- Phasing reads with secondary alignments☆22Nov 30, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- ☆23Sep 21, 2021Updated 5 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆42Oct 28, 2026Updated last week
- A battery of methylation tools for PacBio HiFi reads☆58Updated this week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- ☆12Sep 24, 2025Updated last year
- A method to joint-call RNA isoforms across many IsoSeq samples☆24Aug 6, 2026Updated 3 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A short tandem repeat (STR) genotyping and analysis toolkit for long reads☆22Oct 28, 2026Updated last week
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 4 years ago
- This tools counts the number of specific k-mers within sequence data. The counts can then be compare to other counts to determine to comp…☆32Nov 25, 2024Updated last year
- ☆13Aug 21, 2025Updated last year
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- JTK -- a regional diploid genome assembler☆27Apr 22, 2026Updated 6 months ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago