Alternatives and similar repositories for trgt-denovo:

Users that are interested in trgt-denovo are comparing it to the libraries listed below

• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆29Updated 7 months ago
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆25Updated last month
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆26Updated last year
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆12Updated 2 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆20Updated 8 months ago
• hitbc / gcSV
  ☆17Updated last month
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆28Updated 2 months ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• human-pangenomics / hprc-tutorials
  ☆17Updated last year
• PacificBiosciences / HiFiCNV
  Copy number variant caller and depth visualization utility for PacBio HiFi reads
  ☆41Updated 6 months ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆14Updated 10 months ago
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆29Updated 2 weeks ago
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆33Updated 3 weeks ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆28Updated 4 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 10 months ago
• mrvollger / NucFreq
  ☆35Updated last year
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆18Updated 4 months ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆22Updated 2 months ago
• pangenome / HPRCyear1v2genbank
  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies
  ☆14Updated 2 years ago
• kolikem / loma
  ☆14Updated last year
• AnimalGenomicsETH / bovine-graphs
  Integrate multiple genome assemblies into a pangenome graph
  ☆34Updated 2 years ago
• ComparativeGenomicsToolkit / hal2vg
  Convert HAL to VG
  ☆22Updated 8 months ago
• mgaleyuw / MeOW
  Automated Detection and Qualification of Differential Methylation
  ☆13Updated last year
• esrice / trio_binning
  Programs implementing the trio-binning genome assembly method
  ☆19Updated last year
• maickrau / ribotin
  ☆32Updated this week
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated last year
• farhangus / Sniffles2_plot
  ☆29Updated 8 months ago