PacificBiosciences / trgt-denovo
De novo tandem repeat calling from PacBio HiFi data
☆14Updated last month
Related projects ⓘ
Alternatives and complementary repositories for trgt-denovo
- Structural variant discovery and genotyping from mapped PacBio HiFi data☆30Updated last month
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- Identification of segmental duplications in the genome☆26Updated 2 years ago
- Tandem repeat genotyping with long reads☆25Updated 2 months ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆13Updated 5 months ago
- Very simple and configurable all-in-one dotplot program☆12Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆18Updated 3 months ago
- ☆15Updated 7 months ago
- Methylmap is a tool for visualization of modified nucleotide frequencies for large cohort sizes.☆18Updated last week
- SV calling for diploid assemblies☆23Updated 8 months ago
- Kmer Analysis of Pileups for Genotyping☆19Updated 2 weeks ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆24Updated 6 months ago
- Convert HAL to VG☆21Updated 3 months ago
- Variant annotation and merging pipeline☆29Updated 3 weeks ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- Phasing reads with secondary alignments☆16Updated 7 months ago
- ☆27Updated 3 months ago
- Detect and phase minor SNVs from long-read sequencing data☆15Updated 2 years ago
- ☆33Updated 8 months ago
- ☆12Updated 7 months ago
- Method to optimally select samples for validation and resequencing☆26Updated 3 years ago
- Tumor-normal variant calling workflow using HiFi reads☆12Updated 3 weeks ago
- SV genotyping with long reads☆40Updated last year
- A long-read analysis toolbox for cancer and population genomics☆20Updated 8 months ago