Alternatives and similar repositories for trgt-denovo

Users that are interested in trgt-denovo are comparing it to the libraries listed below

• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated last year
• gymrek-lab / LongTR
  Tandem repeat genotyping with long reads
  ☆30Updated 2 weeks ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• rlorigro / simple-dotplot
  Very simple and configurable all-in-one dotplot program
  ☆14Updated 2 years ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆28Updated last year
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• ACEnglish / kanpig
  Kmer Analysis of Pileups for Genotyping
  ☆32Updated this week
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated 2 months ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• vpc-ccg / sedef
  Identification of segmental duplications in the genome
  ☆27Updated 3 years ago
• hitbc / gcSV
  ☆21Updated 7 months ago
• davidebolo1993 / cosigt
  COsine-based SImilarity Genotyper using pangenomes
  ☆21Updated last week
• mrvollger / NucFreq
  ☆38Updated this week
• human-pangenomics / hprc-tutorials
  ☆18Updated last year
• 1kg-ont-vienna / sv-analysis
  SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel
  ☆35Updated 5 months ago
• maickrau / ribotin
  ☆36Updated 2 months ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 10 months ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆20Updated 10 months ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆26Updated 3 months ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 2 months ago
• asylvz / SVarp
  Phased structural variant discovery in pangenomes
  ☆36Updated last year
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆33Updated this week
• marbl / training
  Genome Assembly 102
  ☆14Updated 5 months ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆29Updated last month
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated last year
• thegenemyers / MERQURY.FK
  FastK based version of Merqury
  ☆28Updated 2 weeks ago
• farhangus / Sniffles2_plot
  ☆31Updated last year
• ablab / stringdecomposer
  Tool for decomposition centromeric assemblies and long reads into monomers
  ☆35Updated 3 years ago
• at-cg / RAFT
  ☆28Updated last year