Alternatives and similar repositories for strand-seq-graph-phasing

Users that are interested in strand-seq-graph-phasing are comparing it to the libraries listed below

• StephenHwang / MEMO
  MEMO: MEM-based pangenome indexing for k-mer queries
  ☆20Updated last year
• ekg / pafcheck
  PAF (pairwise alignment format) validator based on extended CIGAR strings
  ☆15Updated 6 months ago
• pangenome / genotypify
  Genotyping lots of samples with big pangenomes
  ☆11Updated 3 months ago
• bioinfo-ut / GeneToCN
  Gene copy number prediction from k-mer frequencies
  ☆14Updated last year
• marbl / training
  Genome Assembly 102
  ☆17Updated 9 months ago
• ktan8 / nanopore_telomere_basecall
  ☆15Updated 2 years ago
• ASLeonard / pandrawer
  Everything but the kitchen sink
  ☆12Updated last year
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 2 months ago
• ekg / fastix
  Prefix-renaming FASTA records really fast.
  ☆17Updated last year
• Adamtaranto / TIRmite
  Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.
  ☆10Updated 2 weeks ago
• mobinasri / secphase
  Phasing reads with secondary alignments
  ☆21Updated last year
• jmonlong / manu-vggafannot
  Efficient indexing and querying of annotations in a pangenome graph
  ☆10Updated 3 months ago
• Maize-Genetics-and-Genomics-Database / PanEffect
  PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…
  ☆13Updated 2 years ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• magspho / hifieval
  a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).
  ☆21Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• thecgs / quickprot
  QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics
  ☆16Updated 3 weeks ago
• LankyCyril / edgecase
  A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…
  ☆16Updated 2 years ago
• dubssieg / rs-pancat-compare
  Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
  ☆12Updated 4 months ago
• ERGA-consortium / pipelines
  ☆17Updated 3 weeks ago
• PacificBiosciences / portello
  Transfer HiFi read mappings from their own assembly contigs to a standard reference
  ☆29Updated last month
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆25Updated last year
• wjidea / defusion
  defusion
  ☆14Updated 4 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆31Updated 3 weeks ago
• almeidasilvaf / HybridExpress
  An R package for comparative transcriptomic analyses of hybrids and their progenitors
  ☆15Updated last year
• ldenti / palss
  ☆23Updated 5 months ago
• shilpagarg / sdip
  ☆10Updated 5 years ago
• panlab-bioinfo / RAfilter
  A filter algorithm with program to filter an alignment or mapping file
  ☆12Updated 8 months ago
• pdishuck / GAVISUNK
  Genome Assembly Validation via Inter-SUNK distances in ONT reads
  ☆15Updated 2 years ago
• GP2code / CNV-Finder
  Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.
  ☆12Updated 7 months ago