Alternatives and similar repositories for CaImAn

Users that are interested in CaImAn are comparing it to the libraries listed below

• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆396Updated last month
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆257Updated 2 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆127Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 11 months ago
• cortex-lab / phy
  phy: interactive visualization and manual spike sorting of large-scale ephys data
  ☆367Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆138Updated 3 weeks ago
• MouseLand / Kilosort
  Fast spike sorting with drift correction
  ☆544Updated 2 weeks ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆235Updated 4 months ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆61Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆148Updated 2 months ago
• SpikeInterface / spikeinterface
  A Python-based module for creating flexible and robust spike sorting pipelines.
  ☆631Updated last week
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆151Updated 3 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆96Updated 6 months ago
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆186Updated last year
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆119Updated 11 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆93Updated 8 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 2 months ago
• AllenInstitute / AllenSDK
  code for reading and processing Allen Institute for Brain Science data
  ☆364Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆173Updated 2 weeks ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆93Updated 2 weeks ago
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆138Updated last month
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆45Updated 2 years ago
• petersaj / AP_histology
  Histology processing
  ☆67Updated 3 weeks ago
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 3 months ago
• pynapple-org / pynapple
  PYthon Neural Analysis Package
  ☆320Updated this week
• Julie-Fabre / awesome_neuropixels
  A curated list of awesome Neuropixels resources.
  ☆109Updated this week
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year