flatironinstitute / CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
☆646Updated this week
Alternatives and similar repositories for CaImAn:
Users that are interested in CaImAn are comparing it to the libraries listed below
- cell detection in calcium imaging recordings☆368Updated 2 weeks ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆253Updated last year
- Tools for processing 2P recordings☆124Updated last year
- Fast spike sorting with drift correction☆497Updated this week
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆332Updated 5 months ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆143Updated 5 months ago
- Registration of cells across sessions.☆71Updated 4 months ago
- Tools to work with Allen Inst CCF data in matlab☆127Updated 10 months ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆549Updated this week
- Matlab routines for online non-rigid motion correction of calcium imaging data☆146Updated 2 years ago
- a visualization method for neural data☆202Updated 3 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 7 months ago
- PYthon Neural Analysis Package☆289Updated this week
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆127Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 6 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆162Updated last month
- code for reading and processing Allen Institute for Brain Science data☆351Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆62Updated 2 months ago
- Automated 3D cell detection in very large images☆181Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆110Updated 5 months ago
- A Python API for working with Neurodata stored in the NWB Format☆182Updated last week
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 5 years ago
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- GPU code for spike sorting☆180Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆84Updated 2 months ago
- Brain Modeling Toolkit☆279Updated last month
- Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology fil…☆333Updated this week
- Elephant is the Electrophysiology Analysis Toolkit☆205Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with…☆192Updated 11 months ago