flatironinstitute / CaImAnLinks
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
☆696Updated 2 weeks ago
Alternatives and similar repositories for CaImAn
Users that are interested in CaImAn are comparing it to the libraries listed below
Sorting:
- cell detection in calcium imaging recordings☆407Updated last month
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- Tools for processing 2P recordings☆128Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Registration of cells across sessions.☆75Updated last year
- phy: interactive visualization and manual spike sorting of large-scale ephys data☆379Updated last week
- Tools to work with Allen Inst CCF data in matlab☆142Updated 3 months ago
- a visualization method for neural data☆238Updated 6 months ago
- Fast spike sorting with drift correction☆565Updated last month
- code for reading and processing Allen Institute for Brain Science data☆369Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆178Updated 3 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆152Updated last week
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- A Python-based module for creating flexible and robust spike sorting pipelines.☆670Updated this week
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆98Updated 11 months ago
- Fiber Photometry Modular Analysis Tool Suite☆40Updated 4 years ago
- GPU code for spike sorting☆188Updated last year
- A Python API for working with Neurodata stored in the NWB Format☆202Updated 2 weeks ago
- Free, platform independent, behavior tracking software.☆139Updated 4 months ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- PYthon Neural Analysis Package☆329Updated this week
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆63Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆77Updated 6 months ago