Compression, denoising and demixing of functional imaging recordings
☆31Jul 11, 2018Updated 8 years ago
Alternatives and similar repositories for funimag
Users that are interested in funimag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trend Filter Denoising☆22Jul 30, 2021Updated 5 years ago
- Zero-Inflated Gamma probabilistic model☆11Jul 7, 2021Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 7 months ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated this week
- ☆43Sep 29, 2021Updated 5 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- ☆20Aug 17, 2020Updated 6 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆741Oct 12, 2026Updated 2 weeks ago
- perspective-correct VR for freely moving animals engine☆17Mar 7, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Pytorch implementation of LocaNMF☆37Feb 17, 2020Updated 6 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- ☆224Jun 3, 2024Updated 2 years ago
- ☆18May 26, 2023Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Scripts and utilities for processing electrophysiology data☆11Jul 21, 2020Updated 6 years ago
- Matlab package implementing blind deconvolution method for neural spike recovery☆14Sep 20, 2016Updated 10 years ago
- Recordings of 10k neurons during spontaneous behaviors☆55Aug 12, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- Disentangled Sticky Hierarchical Dirichlet Process Hidden Markov Model☆37Aug 4, 2020Updated 6 years ago
- Dynamical Components Analysis☆38Aug 28, 2025Updated last year
- Multidigraph learning (MDGL) for training recurrent spiking neural networks☆13Dec 18, 2021Updated 4 years ago
- Code accompanying Steinmetz et al., 2019☆63Aug 9, 2021Updated 5 years ago
- Differentiable 4f microscope/phase mask simulation☆10Feb 23, 2025Updated last year
- ☆36May 19, 2025Updated last year
- Matlab routines for online non-rigid motion correction of calcium imaging data☆160May 29, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository contains the code used to perform simulations and obtain plots used in the Hierarchical Boostrap paper in addition to som…☆11Apr 28, 2020Updated 6 years ago
- IaC codebase for the NeuroCAAS Platform☆41Dec 15, 2023Updated 2 years ago
- ☆16May 25, 2020Updated 6 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆155Aug 2, 2024Updated 2 years ago
- ☆15May 24, 2021Updated 5 years ago
- Bio-FlatScope reconstruction code☆14Mar 21, 2023Updated 3 years ago
- General purpose Matlab toolbox for neuroscience research created by Van Hooser lab and collaborators☆12Updated this week