paninski-lab / funimagLinks
Compression, denoising and demixing of functional imaging recordings
☆28Updated 7 years ago
Alternatives and similar repositories for funimag
Users that are interested in funimag are comparing it to the libraries listed below
Sorting:
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- IaC codebase for the NeuroCAAS Platform☆39Updated last year
- Deconvolution of calcium imaging data☆101Updated 10 months ago
- motion correction☆17Updated 2 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Single photon tools for Neuroscience☆36Updated last month
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- ☆17Updated 2 years ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 8 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 3 weeks ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 6 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆41Updated 4 years ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- IBL core shared libraries☆65Updated this week
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Keras network for spike detection from calcium traces☆12Updated 5 years ago
- YASS: Yet Another Spike Sorter☆70Updated 3 years ago
- ☆34Updated 6 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last month