Alternatives and similar repositories for funimag:

Users that are interested in funimag are comparing it to the libraries listed below

• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆34Updated 4 years ago
• NTCColumbia / moco
  motion correction
  ☆16Updated 2 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆35Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆23Updated 5 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆35Updated last year
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆16Updated last year
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆45Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆86Updated last week
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆14Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• zhoupc / OASIS_matlab
  ☆34Updated 3 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆67Updated last month
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆14Updated 5 years ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆14Updated last year
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆62Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆44Updated 5 years ago
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆11Updated 2 months ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆143Updated 5 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆84Updated 2 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆127Updated last week
• MouseLand / EnsemblePursuit
  ☆9Updated 4 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 6 months ago
• pillowlab / LNPfitting
  Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
  ☆19Updated 7 years ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆21Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆50Updated last month