Compression, denoising and demixing of functional imaging recordings
☆31Jul 11, 2018Updated 8 years ago
Alternatives and similar repositories for funimag
Users that are interested in funimag are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Trend Filter Denoising☆22Jul 30, 2021Updated 5 years ago
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python module for accessing Hamamatsu DCIMG files☆14Jun 28, 2023Updated 3 years ago
- A minimal package for saving and reading large HDF5-based chunked arrays.☆15Apr 12, 2022Updated 4 years ago
- ☆43Sep 29, 2021Updated 5 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- perspective-correct VR for freely moving animals engine☆17Mar 7, 2023Updated 3 years ago
- ☆20Aug 17, 2020Updated 6 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 7 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆740Sep 22, 2026Updated 2 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 6 years ago
- Pytorch implementation of LocaNMF☆37Feb 17, 2020Updated 6 years ago
- ☆18May 26, 2023Updated 3 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- A universal MATLAB driver for Basler cameras☆22Jul 27, 2018Updated 8 years ago
- Recordings of 10k neurons during spontaneous behaviors☆55Aug 12, 2026Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Matlab package implementing blind deconvolution method for neural spike recovery☆14Sep 20, 2016Updated 10 years ago
- Code accompanying Steinmetz et al., 2019☆63Aug 9, 2021Updated 5 years ago
- a visualization method for neural data☆257Apr 4, 2025Updated last year
- ☆36May 19, 2025Updated last year
- IaC codebase for the NeuroCAAS Platform☆40Dec 15, 2023Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆154Aug 2, 2024Updated 2 years ago
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- ☆15May 24, 2021Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆16May 25, 2020Updated 6 years ago
- Bio-FlatScope reconstruction code☆14Mar 21, 2023Updated 3 years ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Feb 26, 2020Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆25Nov 7, 2022Updated 3 years ago
- Poisson Identifiable VAE (pi-VAE)☆54Jul 7, 2021Updated 5 years ago
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- Zernike Optimized Localization Algorithm for 3D single molecule localizations☆19Sep 20, 2022Updated 4 years ago