Alternatives and similar repositories for funimag:

Users that are interested in funimag are comparing it to the libraries listed below

• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆35Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆47Updated last year
• NTCColumbia / moco
  motion correction
  ☆16Updated 2 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆90Updated last month
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆16Updated this week
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 5 years ago
• nel-lab / FIOLA
  ☆34Updated last year
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated 3 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• YijunBao / Shallow-UNet-Neuron-Segmentation_SUNS
  ☆17Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• adamcohenlab / invivo-imaging
  Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)
  ☆14Updated last year
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆16Updated last year
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 2 weeks ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆14Updated 5 years ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 10 months ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆14Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆92Updated 7 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆86Updated 4 months ago
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆35Updated last year
• calebweinreb / SNUB
  ☆26Updated 8 months ago
• mukamel-lab / CellSort
  This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …
  ☆25Updated 6 years ago
• churchlandlab / WidefieldImager
  Pre-processing pipeline for widefield data
  ☆11Updated 4 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆133Updated this week
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆44Updated 5 years ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year