caichangjia / VolPyLinks
Voltage imaging analysis in python
☆10Updated 4 years ago
Alternatives and similar repositories for VolPy
Users that are interested in VolPy are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last week
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆52Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month
- motion correction☆17Updated 3 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Updated last week
- Histology processing☆72Updated last month
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55Updated last year
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆24Updated 3 years ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated this week
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- A Python interface to access neuroanatomical atlases☆172Updated this week
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- Calcium imaging inter-session alignment☆15Updated last month
- ☆34Updated 8 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago