schnitzer-lab / EXTRACT-publicLinks
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
☆74Updated 6 months ago
Alternatives and similar repositories for EXTRACT-public
Users that are interested in EXTRACT-public are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- miniscope analysis pipeline with interactive visualizations☆93Updated 11 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 7 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 2 months ago
- Registration of cells across sessions.☆75Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated 3 weeks ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- "Approaches to Study Neural Circuits" course☆65Updated 6 months ago
- Histology processing☆66Updated 2 weeks ago
- Region Of Interest Classification and Tracking☆19Updated this week
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆14Updated 7 years ago
- pyqt5 dependent applications for IBL sessions☆27Updated this week
- WIP: Python port of Kilosort2☆51Updated last year
- ☆52Updated 9 months ago
- Package for automatic post-processing and merging of multiple spike-sorting analyses.☆26Updated this week
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated 3 weeks ago
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆63Updated this week
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆25Updated 2 months ago
- Matlab code for interacting with the Open Ephys GUI☆15Updated 9 months ago
- A curated list of awesome Neuropixels resources.☆104Updated 3 weeks ago
- Algorithm for automated source extraction from 1P data☆20Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 5 months ago
- Utilities for managing Neuropixel datasets and Kilosort results☆47Updated last month
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆60Updated last month
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆104Updated 6 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆35Updated last week