j-friedrich / OASISLinks
Deconvolution of calcium imaging data
☆96Updated 5 months ago
Alternatives and similar repositories for OASIS
Users that are interested in OASIS are comparing it to the libraries listed below
Sorting:
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- An algorithm for unsupervised discovery of sequential structure☆166Updated last year
- YASS: Yet Another Spike Sorter☆68Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- Tools for processing 2P recordings☆127Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- a visualization method for neural data☆229Updated 3 months ago
- IBL core shared libraries☆63Updated 2 weeks ago
- A class for using ML algorithms for spike prediction☆60Updated 7 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 4 months ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 5 years ago
- Region Of Interest Classification and Tracking☆19Updated last week
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆42Updated 5 years ago
- Elephant is the Electrophysiology Analysis Toolkit☆216Updated 3 months ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- Functions to assess quality of spike sorting results☆34Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- ☆39Updated 3 years ago
- Revealing neural correlates of behavior without behavioral measurements☆14Updated 5 years ago
- Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data☆94Updated 2 years ago
- Fast and scalable spike sorting in python☆92Updated last year
- NEural MOdelS, a statistical modeling framework for neuroscience.☆100Updated this week
- WIP: Python port of Kilosort2☆51Updated 2 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆40Updated 3 months ago