j-friedrich / OASISLinks
Deconvolution of calcium imaging data
☆101Updated 10 months ago
Alternatives and similar repositories for OASIS
Users that are interested in OASIS are comparing it to the libraries listed below
Sorting:
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- IaC codebase for the NeuroCAAS Platform☆39Updated last year
- IBL core shared libraries☆65Updated this week
- YASS: Yet Another Spike Sorter☆70Updated 3 years ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- a visualization method for neural data☆239Updated 8 months ago
- Region Of Interest Classification and Tracking☆27Updated 3 weeks ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 3 months ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆41Updated 8 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated 11 months ago
- ☆41Updated 4 years ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆46Updated 6 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆111Updated this week
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Updated 6 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆17Updated 2 years ago
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Single photon tools for Neuroscience☆36Updated last month