Deconvolution of calcium imaging data
☆107Jun 4, 2026Updated last month
Alternatives and similar repositories for OASIS
Users that are interested in OASIS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆42Sep 29, 2021Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆164May 29, 2026Updated last month
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Jun 27, 2026Updated last week
- ☆17May 26, 2023Updated 3 years ago
- cell detection in calcium imaging recordings☆457Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 3 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Trend Filter Denoising☆22Jul 30, 2021Updated 4 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Aug 2, 2024Updated last year
- Voltage imaging analysis in python☆10May 25, 2021Updated 5 years ago
- An algorithm for unsupervised discovery of sequential structure☆177Mar 17, 2024Updated 2 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆98Jun 26, 2026Updated last week
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34May 25, 2026Updated last month
- Elephant is the Electrophysiology Analysis Toolkit☆242Jun 21, 2026Updated last week
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Apr 23, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- train a spiking recurrent neural network☆16Aug 29, 2024Updated last year
- A GLM based approach to measure CFC☆16Oct 4, 2019Updated 6 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆196Jan 26, 2026Updated 5 months ago
- ☆13Aug 7, 2020Updated 5 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆78Updated this week
- Python implementation of fast-oopsi, smc-oopsi, wiener, and discretize with binning☆15May 17, 2022Updated 4 years ago
- Matlab codepack for performing dimensionality reduction on neural data using TD-GPFA or GPFA.☆22Jul 30, 2017Updated 8 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Jun 18, 2024Updated 2 years ago
- Serial-section automated anatomy extension for ScanImage