A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆65Jun 18, 2024Updated 2 years ago
Alternatives and similar repositories for MIN1PIPE
Users that are interested in MIN1PIPE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to analyse calcium imaging data recorded with the Miniscope.☆31Apr 11, 2022Updated 4 years ago
- Data acquisition source code for Miniscope project.☆16Jun 12, 2019Updated 7 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆131Jun 22, 2026Updated last week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Aug 2, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Jun 26, 2026Updated last week
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- TENASPIS☆10Feb 15, 2021Updated 5 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Portable Miniscope Data Acquisition☆22Jun 23, 2026Updated last week
- A GUI and library for doing multi-fiber photometry☆19Oct 12, 2017Updated 8 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Jun 27, 2026Updated last week
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆14Jun 3, 2025Updated last year
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆15May 13, 2018Updated 8 years ago
- Single photon tools for Neuroscience☆36Oct 29, 2025Updated 8 months ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- ☆17May 26, 2023Updated 3 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- ☆34May 19, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆164May 29, 2026Updated last month
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated 11 months ago
- Deconvolution of calcium imaging data☆107Jun 4, 2026Updated last month
- ☆21Apr 27, 2022Updated 4 years ago
- msgpack.org[Matlab]☆16Sep 19, 2024Updated last year
- cell detection in calcium imaging recordings☆457Updated this week
- NEW v1.1: https://github.com/dstolz/epsych_v1.1 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and sof…☆15Apr 14, 2022Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆26Jun 4, 2026Updated last month
- ☆11Oct 19, 2023Updated 2 years ago
- ☆12Mar 25, 2022Updated 4 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆88Updated this week
- Trend Filter Denoising☆22Jul 30, 2021Updated 4 years ago
- 'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/cur…☆12Jun 19, 2026Updated 2 weeks ago
- COmmon COordinate FRAMEwork in R☆42May 19, 2020Updated 6 years ago