JinghaoLu / MIN1PIPELinks
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆65Updated last year
Alternatives and similar repositories for MIN1PIPE
Users that are interested in MIN1PIPE are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆76Updated last year
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆55Updated last year
- Fiber photometry analysis☆23Updated last week
- Histology processing☆72Updated last month
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last month
- A curated list of awesome Neuropixels resources.☆124Updated last month
- pyqt5 dependent applications for IBL sessions☆32Updated 2 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆66Updated 2 months ago
- ☆52Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated 2 weeks ago
- a visualization method for neural data☆241Updated 10 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- cortex lab code for electrophysiology☆85Updated 2 years ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆15Updated 3 weeks ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Updated 11 months ago
- Open-source stereotaxic coordinator☆15Updated 3 years ago