JinghaoLu / MIN1PIPE
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆59Updated 9 months ago
Alternatives and similar repositories for MIN1PIPE:
Users that are interested in MIN1PIPE are comparing it to the libraries listed below
- Registration of cells across sessions.☆73Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- Fiber photometry analysis☆22Updated 3 months ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆130Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 6 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 2 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 3 weeks ago
- Analysis package for miniscope data☆13Updated 2 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- Histology processing☆65Updated last week
- Python code implementing the ZETA-test☆26Updated 6 months ago
- pyqt5 dependent applications for IBL sessions☆26Updated last week
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated 3 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆59Updated 3 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 3 months ago
- ☆11Updated 8 years ago
- cortex lab code for electrophysiology☆79Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆118Updated last month
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 2 years ago
- ☆26Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year