JinghaoLu / MIN1PIPE
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆59Updated 10 months ago
Alternatives and similar repositories for MIN1PIPE:
Users that are interested in MIN1PIPE are comparing it to the libraries listed below
- Registration of cells across sessions.☆75Updated 8 months ago
- Fiber Photometry Modular Analysis Tool Suite☆38Updated 3 years ago
- Fiber photometry analysis☆22Updated last month
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- Tools to work with Allen Inst CCF data in matlab☆132Updated last year
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- pyqt5 dependent applications for IBL sessions☆26Updated 3 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆59Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 7 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆23Updated last month
- Histology processing☆65Updated 2 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 months ago
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 3 months ago
- Python package to handle probe layout, geometry and wiring to device.☆61Updated this week
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- cortex lab code for electrophysiology☆81Updated last year
- Python code implementing the ZETA-test☆26Updated last month
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 4 months ago
- ☆11Updated 8 years ago
- "Approaches to Study Neural Circuits" course☆65Updated 4 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- Analysis package for miniscope data☆13Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Updated 3 years ago