A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆65Jun 18, 2024Updated last year
Alternatives and similar repositories for MIN1PIPE
Users that are interested in MIN1PIPE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data acquisition source code for Miniscope project.☆16Jun 12, 2019Updated 6 years ago
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- All things Miniscope v4☆150Aug 9, 2023Updated 2 years ago
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆127Feb 2, 2024Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- Registration of cells across sessions.☆77Aug 20, 2024Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Jul 4, 2023Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- TENASPIS☆10Feb 15, 2021Updated 5 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Portable Miniscope Data Acquisition☆22Mar 15, 2026Updated last week
- A GUI and library for doing multi-fiber photometry☆18Oct 12, 2017Updated 8 years ago
- MATLAB analysis functions for Miniscope project.☆19Mar 16, 2017Updated 9 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆85Mar 11, 2026Updated last week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆718Feb 19, 2026Updated last month
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆13Jun 3, 2025Updated 9 months ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated 10 months ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Feb 26, 2020Updated 6 years ago
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆15May 13, 2018Updated 7 years ago
- DAQ firmware for V3 and V4 Miniscope platforms☆18Feb 20, 2024Updated 2 years ago
- Single photon tools for Neuroscience☆36Oct 29, 2025Updated 4 months ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 6 years ago
- ☆17May 26, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆157May 29, 2022Updated 3 years ago
- ☆34May 19, 2025Updated 10 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆35Apr 9, 2020Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆159Feb 11, 2026Updated last month
- Tools to work with Allen Inst CCF data in matlab☆145Jul 15, 2025Updated 8 months ago
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- ☆19Apr 27, 2022Updated 3 years ago
- ☆41Sep 29, 2021Updated 4 years ago
- msgpack.org[Matlab]☆16Sep 19, 2024Updated last year
- cell detection in calcium imaging recordings☆438Mar 15, 2026Updated last week
- NEW v1.1: https://github.com/dstolz/epsych_v1.1 Epsych is a toolbox for extending Tucker-Davis Technologies hardware and sof…☆15Apr 14, 2022Updated 3 years ago
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago
- ☆25Feb 8, 2026Updated last month
- ☆12Oct 19, 2023Updated 2 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆84Mar 13, 2026Updated last week