JinghaoLu / MIN1PIPELinks
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆65Updated last year
Alternatives and similar repositories for MIN1PIPE
Users that are interested in MIN1PIPE are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆76Updated last year
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Tools to work with Allen Inst CCF data in matlab☆145Updated 6 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Updated 9 months ago
- Histology processing☆72Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- ☆52Updated last year
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Free, platform independent, behavior tracking software.☆143Updated 7 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆39Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last month
- Fiber photometry analysis☆23Updated last week
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated this week
- pyqt5 dependent applications for IBL sessions☆32Updated last week
- A curated list of awesome Neuropixels resources.☆124Updated last month
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Updated last week
- a visualization method for neural data☆241Updated 10 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆66Updated 2 months ago
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago