JinghaoLu / MIN1PIPELinks
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
☆63Updated last year
Alternatives and similar repositories for MIN1PIPE
Users that are interested in MIN1PIPE are comparing it to the libraries listed below
Sorting:
- Registration of cells across sessions.☆75Updated last year
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Histology processing☆71Updated last week
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Tools for processing 2P recordings☆130Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated last week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Free, platform independent, behavior tracking software.☆143Updated 6 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 2 months ago
- Fiber photometry analysis☆22Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- A curated list of awesome Neuropixels resources.☆121Updated last week
- Complete Matlab pipeline for large scale calcium imaging data analysis☆259Updated 2 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated 2 weeks ago
- ☆52Updated last year
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 8 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆33Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆12Updated last month
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆30Updated 3 weeks ago