Alternatives and similar repositories for CalBlitz

Users that are interested in CalBlitz are comparing it to the libraries listed below

• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆130Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆33Updated 5 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆39Updated 2 years ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆33Updated 2 years ago
• losonczylab / sima
  Python package for analysis of dynamic fluorescence microscopy data
  ☆103Updated 6 years ago
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated 2 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆103Updated 11 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• JaneliaMLCourse / JaneliaMLCourse
  ☆20Updated 7 years ago
• lucastheis / c2s
  A toolbox for inferring spikes from calcium traces.
  ☆23Updated 2 years ago
• PTRRupprecht / Spikefinder-Elephant
  Keras network for spike detection from calcium traces
  ☆12Updated 5 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆148Updated last year
• mattbdean / Helium
  A companion website for DataJoint
  ☆10Updated 3 weeks ago
• cortex-lab / alyx
  Database for experimental neuroscience laboratories
  ☆50Updated last week
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆66Updated last week
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆62Updated last month
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 3 months ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• apasarkar / jnormcorre
  Jax implementation of normcorre
  ☆12Updated 11 months ago
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 7 years ago
• mesoscale-activity-map / map-ephys
  Mesoscale activity ephys ingest schema
  ☆11Updated 2 years ago