PeyracheLab / miniscoPy
A package to analyse calcium imaging data recorded with the Miniscope.
☆32Updated 3 years ago
Alternatives and similar repositories for miniscoPy:
Users that are interested in miniscoPy are comparing it to the libraries listed below
- Analysis package for miniscope data☆13Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Region Of Interest Classification and Tracking☆18Updated last week
- Registration of cells across sessions.☆75Updated 8 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 10 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆140Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Browser-based NWB visualization and DANDI exploration☆57Updated last week
- IBL core shared libraries☆63Updated last week
- WIP: Python port of Kilosort2☆51Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆87Updated 3 weeks ago
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 3 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 months ago
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- pyqt5 dependent applications for IBL sessions☆26Updated 3 weeks ago
- IaC codebase for the NeuroCAAS Platform☆37Updated last year
- NEural MOdelS, a statistical modeling framework for neuroscience.☆95Updated this week
- Histology processing☆65Updated 2 weeks ago
- ☆51Updated 8 months ago
- Algorithm for automated source extraction from 1P data☆21Updated last year
- ☆34Updated last year
- Web app for viewing results of ephys spike sorting☆25Updated 2 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆114Updated 8 months ago
- Pytorch implementation of LocaNMF☆35Updated 5 years ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆57Updated this week
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- Single photon tools for Neuroscience☆35Updated last year