PeyracheLab / miniscoPyLinks
A package to analyse calcium imaging data recorded with the Miniscope.
☆33Updated 3 years ago
Alternatives and similar repositories for miniscoPy
Users that are interested in miniscoPy are comparing it to the libraries listed below
Sorting:
- Analysis package for miniscope data☆14Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Registration of cells across sessions.☆75Updated last year
- IBL core shared libraries☆63Updated this week
- Mesoscale activity ephys ingest schema☆11Updated 2 years ago
- Region Of Interest Classification and Tracking☆24Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 2 weeks ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 2 weeks ago
- Histology processing☆69Updated last month
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 4 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆128Updated last month
- Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.☆50Updated 3 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆93Updated last week
- Browser-based NWB visualization and DANDI exploration☆59Updated last week
- Deconvolution of calcium imaging data☆98Updated 7 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆119Updated last year
- Python package to handle probe layout, geometry and wiring to device.☆69Updated 2 weeks ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆105Updated 8 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆53Updated 7 months ago
- cortex lab code for electrophysiology☆83Updated last year
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Functions to assess quality of spike sorting results☆34Updated last year