A package to analyse calcium imaging data recorded with the Miniscope.
☆32Apr 11, 2022Updated 4 years ago
Alternatives and similar repositories for miniscoPy
Users that are interested in miniscoPy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- A course given at the 2017 Canadian Neuroscience meeting, Neural Signal Analysis Satellite.☆15May 13, 2018Updated 8 years ago
- MATLAB analysis functions for Miniscope project.☆19Mar 16, 2017Updated 9 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- ☆12Nov 7, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Data acquisition source code for Miniscope project.☆16Jun 12, 2019Updated 6 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆156May 29, 2022Updated 3 years ago
- All things Miniscope v4☆153Apr 10, 2026Updated last month
- Tutorial☆11Jan 25, 2021Updated 5 years ago
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 2 years ago
- TENASPIS☆10Feb 15, 2021Updated 5 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- python bindings to the ClearVolume project that enables serving numpy data from within python to the renderer.☆15Jan 24, 2017Updated 9 years ago
- A GUI built on brainrender: visualise brain regions, neurons and labelled cells.☆12Nov 26, 2020Updated 5 years ago
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆85Updated this week
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18May 13, 2026Updated last week
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels rec…☆11Jul 1, 2025Updated 10 months ago
- ☆16May 25, 2020Updated 5 years ago
- Tools, algorithms, and frameworks for managing and analyzing neural data.☆20Mar 21, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Nov 14, 2024Updated last year
- A Python implementation of fast non-negative deconvolution☆23Oct 22, 2019Updated 6 years ago
- spike sorting software☆27Sep 6, 2018Updated 7 years ago
- DAQ firmware for V3 and V4 Miniscope platforms☆18Feb 20, 2024Updated 2 years ago
- Urai AE, Doiron B, Leifer AM & Churchland AK (2022) Large-scale neural recordings call for new insights to link brain and behavior. Natur…☆18Mar 4, 2022Updated 4 years ago
- NeoPixel LED Controller | NeoPixel LED 控制器 | 基於MAX10 FPGA的音樂全彩光立方LED控制器☆12Jan 4, 2022Updated 4 years ago
- DDS (Direct Digital Synthesis) Analog Devices AD9910 Arduino Shield by GRA & AFCH☆12Apr 11, 2025Updated last year
- MountainLab is data processing, sharing and visualization software for scientists. It is built around MountainSort, spike sorting softwar…☆47Apr 30, 2019Updated 7 years ago
- ☆37Nov 9, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- offline/online spike sorting. Un logiciel de gauche qui ne fait pas d'amalgame entre la classe et la coquetterie.☆57Apr 16, 2026Updated last month
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆13Jun 3, 2025Updated 11 months ago
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆16May 5, 2026Updated 2 weeks ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆56May 10, 2024Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆27Jul 22, 2024Updated last year
- Voltage imaging analysis in python☆10May 25, 2021Updated 4 years ago