Alternatives and similar repositories for Miniscope-v4

Users that are interested in Miniscope-v4 are comparing it to the libraries listed below

• Aharoni-Lab / Miniscope-DAQ-QT-Software
  Software for streaming and controlling neural and behavioral data from freely behaving animals
  ☆127Updated 2 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆83Updated last year
• delvendahl / miniML
  A deep learning framework for synaptic event detection
  ☆17Updated 3 weeks ago
• kavli-ntnu / MINI2P_toolbox
  The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…
  ☆104Updated 2 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆64Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 3 weeks ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆57Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆98Updated last year
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆143Updated 7 months ago
• Aharoni-Lab / Miniscope-LFOV
  Large field-of-view miniature microscope for rats and larger animals.
  ☆17Updated 2 years ago
• HarveyLab / mouseVR
  Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks
  ☆43Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆28Updated 6 years ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆101Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆49Updated 3 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated last week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆42Updated 4 years ago
• bonvision / BonVision
  BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …
  ☆13Updated 8 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆111Updated 4 months ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆40Updated 2 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆185Updated 2 weeks ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆55Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆145Updated 6 months ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆18Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆80Updated 9 months ago
• petersaj / AP_histology
  Histology processing
  ☆72Updated last month