Alternatives and similar repositories for Miniscope-v4

Users that are interested in Miniscope-v4 are comparing it to the libraries listed below

• Aharoni-Lab / Miniscope-DAQ-QT-Software
  Software for streaming and controlling neural and behavioral data from freely behaving animals
  ☆126Updated last year
• delvendahl / miniML
  A deep learning framework for synaptic event detection
  ☆17Updated last month
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆61Updated last year
• Aharoni-Lab / Miniscope-LFOV
  Large field-of-view miniature microscope for rats and larger animals.
  ☆17Updated 2 years ago
• kavli-ntnu / MINI2P_toolbox
  The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…
  ☆96Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆93Updated 3 weeks ago
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆36Updated last week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆75Updated 7 months ago
• KravitzLabDevices / FED3
  Feeding Experimentation Device version 3
  ☆28Updated last week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• denisecailab / ezTrack
  Free, platform independent, behavior tracking software.
  ☆138Updated last month
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 11 months ago
• bonvision / BonVision
  BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …
  ☆13Updated 2 months ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 4 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆76Updated 3 months ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆138Updated 3 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆150Updated this week
• cortex-lab / widefield
  Image processing and tools for widefield imaging
  ☆18Updated 5 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 2 months ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 10 months ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆173Updated 2 weeks ago
• open-ephys / Bonsai.Miniscope
  Bonsai package for controlling headborne, calcium imaging miniscopes
  ☆12Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆61Updated last year
• Whitlock-Group / HERBS
  ☆52Updated 11 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆28Updated this week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆104Updated 8 months ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year
• petersaj / AP_histology
  Histology processing
  ☆67Updated 3 weeks ago