EricThomson / CCN_caiman_mesmerize_workshop_2023Links
Repo for CCN workshop on caiman and mesmerize in January 2023
☆13Updated 2 years ago
Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023
Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below
Sorting:
- ☆34Updated last month
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- Brainways☆18Updated last month
- ☆8Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 months ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- motion correction☆17Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆43Updated last week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 months ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- Segmentation of anatomical structures in a common coordinate space☆33Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated 8 months ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆16Updated last year
- Calcium imaging inter-session alignment☆11Updated 2 weeks ago
- Serial-section automated anatomy extension for ScanImage☆15Updated last week
- ☆18Updated 3 years ago
- Anatomical space conventions made easy.☆10Updated last week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆13Updated last month
- Flow-Registration toolbox for 2P motion compensation☆24Updated 11 months ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 3 years ago