EricThomson / CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
☆13Updated 2 years ago
Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023:
Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below
- ☆34Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆48Updated last year
- motion correction☆17Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated last week
- Segmentation of anatomical structures in a common coordinate space☆30Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆21Updated last week
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Serial-section automated anatomy extension for ScanImage☆12Updated this week
- Rendering anatomical heatmaps with brainrender and matplotlib☆39Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 weeks ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- Brainways☆16Updated 2 weeks ago
- Flow-Registration toolbox for 2P motion compensation☆22Updated 7 months ago
- ☆18Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated last week
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Automated 3D brain registration in napari with support for multiple species and atlases.☆15Updated last year
- pipeline for volumetric cell segmentation☆12Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- Region Of Interest Classification and Tracking☆16Updated last week
- ☆51Updated 6 months ago
- Histology processing☆65Updated 2 weeks ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated last year
- ☆19Updated last year