EricThomson / CCN_caiman_mesmerize_workshop_2023Links
Repo for CCN workshop on caiman and mesmerize in January 2023
☆13Updated 2 years ago
Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023
Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- ☆34Updated 3 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Serial-section automated anatomy extension for ScanImage☆15Updated last month
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 2 weeks ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- motion correction☆17Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Brainways☆21Updated 3 weeks ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆12Updated last year
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 5 months ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆27Updated 3 weeks ago
- ☆52Updated last year
- Fast, volumetric cell detection. In development.☆18Updated 3 months ago
- Flow-Registration toolbox for 2P motion compensation☆25Updated this week
- computes intrinsic cell features from intracellular electrophysiology data☆27Updated last week
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 2 weeks ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated this week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- Jax implementation of normcorre☆11Updated 7 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Histology processing☆69Updated this week
- ☆45Updated 5 years ago
- A curated list of awesome Janelia software☆17Updated 6 months ago
- analysis tools for large-scale neural recordings☆15Updated 5 months ago