Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023

Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below

• nel-lab / FIOLA
  ☆34Updated 4 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated 3 weeks ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last month
• bkntr / brainways
  Brainways
  ☆21Updated last month
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆28Updated last month
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆69Updated last month
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆22Updated last month
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆23Updated 3 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• brainglobe / brainglobe-space
  Anatomical space conventions made easy.
  ☆10Updated last month
• PrincetonUniversity / BrainPipe
  ☆18Updated 3 years ago
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆12Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated 2 weeks ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆13Updated last week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 2 weeks ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• FlowRegSuite / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆25Updated 3 weeks ago
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• brainglobe / brainreg-napari
  Automated 3D brain registration in napari with support for multiple species and atlases.
  ☆16Updated last year
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆16Updated last month
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆57Updated last week
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆53Updated this week