Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023:

Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below

• nel-lab / FIOLA
  ☆34Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• adamshch / SEUDO
  ☆8Updated 3 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• llerussell / Bruker_PrairieLink
  Stream data from PrairieView into MATLAB to allow online processing and analysis
  ☆11Updated last year
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 11 months ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆66Updated 2 months ago
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆21Updated this week
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆44Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆29Updated 5 years ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆57Updated this week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆22Updated this week
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆40Updated 3 weeks ago
• alihaydaroglu / suite3d
  Fast, volumetric cell detection. In development.
  ☆17Updated last week
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆12Updated last month
• JingyiGF / HERBS
  ☆19Updated last year
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆32Updated this week
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 9 months ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆18Updated last week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 7 months ago
• petersaj / AP_histology
  Histology processing
  ☆65Updated 2 weeks ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆23Updated 9 months ago
• bkntr / brainways
  Brainways
  ☆16Updated last week
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆87Updated 5 months ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆37Updated last year
• neuroinformatics-unit / python-cookiecutter
  Utility to create a basic Python project structure with tests, CI etc.
  ☆28Updated 3 weeks ago
• apasarkar / jnormcorre
  Jax implementation of normcorre
  ☆10Updated 3 months ago