EricThomson / CCN_caiman_mesmerize_workshop_2023Links
Repo for CCN workshop on caiman and mesmerize in January 2023
☆13Updated 2 years ago
Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023
Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆34Updated 5 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- Calcium Data Extraction and Analysis☆46Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆30Updated 2 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated last month
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 3 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Registration to BrainGlobe atlases in napari using Elastix☆23Updated 3 weeks ago
- Brainways☆21Updated 2 months ago
- motion correction☆17Updated 2 years ago
- Calcium imaging inter-session alignment☆13Updated 2 weeks ago
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- ☆52Updated last year
- Histology processing☆71Updated last month
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆12Updated last year
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated 3 weeks ago
- Fast, volumetric cell detection. In development.☆20Updated 4 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆106Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago
- A Python interface to access neuroanatomical atlases☆164Updated 3 weeks ago
- ☆19Updated last year
- ☆45Updated 5 years ago
- Flow-Registration toolbox for 2P motion compensation☆26Updated last month
- Browser-based NWB visualization and DANDI exploration☆60Updated last week