EricThomson / CCN_caiman_mesmerize_workshop_2023Links
Repo for CCN workshop on caiman and mesmerize in January 2023
☆13Updated 2 years ago
Alternatives and similar repositories for CCN_caiman_mesmerize_workshop_2023
Users that are interested in CCN_caiman_mesmerize_workshop_2023 are comparing it to the libraries listed below
Sorting:
- ☆34Updated 2 weeks ago
- ☆8Updated 3 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- Calcium imaging inter-session alignment☆10Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated this week
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆11Updated last year
- motion correction☆17Updated 2 years ago
- Fast, volumetric cell detection. In development.☆17Updated last week
- Brainways☆18Updated 2 weeks ago
- Jax implementation of normcorre☆11Updated 4 months ago
- Serial-section automated anatomy extension for ScanImage☆13Updated 3 weeks ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆41Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated this week
- ☆19Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- ☆36Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated this week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated this week
- Region Of Interest Classification and Tracking☆19Updated this week
- pipeline for volumetric cell segmentation☆12Updated 2 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 months ago
- Utility to create a basic Python project structure with tests, CI etc.☆28Updated this week
- ☆51Updated 9 months ago