NoahApthorpe / ConvnetCellDetection
Automatic cell detection in microscopy data using convolutional networks
☆33Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for ConvnetCellDetection
- benchmarking challenge for finding neurons in imaging data☆70Updated 5 years ago
- A toolbox for inferring spikes from calcium traces.☆23Updated last year
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆25Updated 6 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated last year
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated last year
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆21Updated 5 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆60Updated 5 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆51Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Software package for neuron reconstruction and visualization☆38Updated 7 months ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated last year
- Deconvolution of calcium imaging data☆84Updated 2 months ago
- Tools for distributed alignment of massive images☆75Updated last week
- dataset info for the neurofinder challenge☆10Updated 8 years ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- ☆33Updated 3 years ago
- motion correction☆16Updated last year
- A system for building mouse brain atlas from histology series☆11Updated 4 years ago
- ☆49Updated 6 years ago
- A general illumination correction method for optical microscopy.☆37Updated 3 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 5 years ago
- 3D virtual staining with 2D and 2.5D U-Nets☆27Updated last year
- Geometry Processing of Conventionally Produced Mouse Brain Slice Images☆7Updated 5 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 5 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- jupyter notebook extension to visualize numpy arrays with the neuroglancer☆28Updated 6 years ago
- Documentations of BigNeuron Project progress☆24Updated 8 years ago
- Developing a Brain Atlas through Deep Learning☆51Updated last year
- Read ROI files .zip or .roi generated with ImageJ.☆51Updated 2 years ago
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆15Updated 5 years ago