NoahApthorpe / ConvnetCellDetectionLinks
Automatic cell detection in microscopy data using convolutional networks
☆34Updated 2 years ago
Alternatives and similar repositories for ConvnetCellDetection
Users that are interested in ConvnetCellDetection are comparing it to the libraries listed below
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A toolbox for inferring spikes from calcium traces.☆23Updated 2 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- Legacy project superseded by https://github.com/morphonets/SNT☆12Updated 4 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- benchmarking challenge for finding neurons in imaging data☆74Updated 6 years ago
- Tools for distributed alignment of massive images☆87Updated last month
- R package for segmentation, registration and generating web-based brain atlases from microscope images☆89Updated 4 years ago
- ☆20Updated 7 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 6 months ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- A general illumination correction method for optical microscopy.☆42Updated 4 years ago
- ☆40Updated 5 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆102Updated 6 years ago
- TensorFlow Deconvolution for Microscopy Data☆90Updated 3 years ago
- ☆51Updated 7 years ago
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated 2 years ago
- Software package for neuron reconstruction and visualization☆39Updated 5 months ago
- Density valley clustering (cluserdv). Matlab implementation.☆27Updated 7 years ago
- Microscopy Image Cytometry Toolkit☆114Updated 3 years ago
- ☆40Updated 4 years ago
- ☆45Updated 5 years ago
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- motion correction☆17Updated 2 years ago
- Code for the image processing and analysis described our Nature Protocols paper.☆10Updated 10 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- A Python module for accessing Hamamatsu DCIMG files☆14Updated 2 years ago
- Documentations of BigNeuron Project progress☆24Updated 9 years ago