NoahApthorpe / ConvnetCellDetection
Automatic cell detection in microscopy data using convolutional networks
☆33Updated 2 years ago
Alternatives and similar repositories for ConvnetCellDetection:
Users that are interested in ConvnetCellDetection are comparing it to the libraries listed below
- benchmarking challenge for finding neurons in imaging data☆73Updated 6 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆65Updated 5 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆12Updated 2 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 6 years ago
- A toolbox for inferring spikes from calcium traces.☆23Updated last year
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆28Updated 2 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 6 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆22Updated 2 weeks ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- A general illumination correction method for optical microscopy.☆40Updated 3 years ago
- motion correction☆17Updated 2 years ago
- dataset info for the neurofinder challenge☆11Updated 8 years ago
- Python package for analysis of dynamic fluorescence microscopy data☆100Updated 6 years ago
- ☆36Updated 3 years ago
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- Legacy project superseded by https://github.com/morphonets/SNT☆11Updated 3 years ago
- ☆40Updated 5 years ago
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- An interactive image processing program for biologists written in Python.☆22Updated last month
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Updated 6 years ago
- ☆19Updated 6 years ago
- ☆17Updated last year
- TensorFlow Deconvolution for Microscopy Data☆90Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 3 weeks ago
- Axon/Myelin segmentation using Deep Learning☆120Updated 2 weeks ago
- Dimensionality-reduction and classification for morphology and electrophysiology☆13Updated 7 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- ☆49Updated 6 years ago
- Tools for distributed alignment of massive images☆81Updated last week