Alternatives and similar repositories for OASIS_matlab

Users that are interested in OASIS_matlab are comparing it to the libraries listed below

• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆34Updated 5 years ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆49Updated 3 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated last month
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆97Updated last year
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆131Updated 2 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆56Updated 2 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆104Updated 11 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆28Updated 3 years ago
• ninehundred1 / CalciumSignalExtract
  Extract regions of interest based on correlated pixel intensity
  ☆24Updated 8 years ago
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆151Updated last year
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 6 months ago
• SWC-Advanced-Microscopy / BakingTray
  Serial-section automated anatomy extension for ScanImage
  ☆17Updated this week
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated 2 months ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆33Updated 2 years ago
• llerussell / Naparm
  Control and design of two-photon photostimulation experiments
  ☆17Updated 2 years ago
• petersaj / AP_histology
  Histology processing
  ☆72Updated 3 weeks ago
• kohth / cilds
  Dimensionality reduction of calcium-imaged neuronal population activity
  ☆17Updated 2 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆32Updated 3 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆64Updated last year