nel-lab / mesmerize-coreLinks
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
☆70Updated 4 months ago
Alternatives and similar repositories for mesmerize-core
Users that are interested in mesmerize-core are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated last month
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Registration of cells across sessions.☆75Updated last year
- ☆52Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Histology processing☆71Updated 3 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- a visualization method for neural data☆240Updated 9 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last week
- ☆34Updated 7 months ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated this week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- pipeline for volumetric cell segmentation☆13Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- cell detection in calcium imaging recordings☆423Updated 4 months ago
- Calcium imaging inter-session alignment☆15Updated 3 weeks ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- Voltage imaging analysis in python☆10Updated 4 years ago
- ☆18Updated last year
- motion correction☆17Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago