nel-lab / mesmerize-coreLinks
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
☆70Updated 4 months ago
Alternatives and similar repositories for mesmerize-core
Users that are interested in mesmerize-core are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Histology processing☆72Updated last month
- ☆52Updated last year
- Registration of cells across sessions.☆75Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Updated 6 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated this week
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- pipeline for volumetric cell segmentation☆13Updated last week
- Browser-based NWB visualization and DANDI exploration☆62Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆39Updated 3 weeks ago
- motion correction☆17Updated 3 years ago
- Web app for viewing results of ephys spike sorting☆27Updated 4 months ago
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- a visualization method for neural data☆241Updated 9 months ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Open-source stereotaxic coordinator☆15Updated 3 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated this week
- Calcium imaging inter-session alignment☆15Updated last month
- ☆27Updated this week