Alternatives and similar repositories for mesmerize-core

Users that are interested in mesmerize-core are comparing it to the libraries listed below

• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆52Updated 2 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆76Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated last week
• petersaj / AP_histology
  Histology processing
  ☆70Updated 3 weeks ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆78Updated 9 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆46Updated 2 years ago
• Whitlock-Group / HERBS
  ☆52Updated last year
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆44Updated 2 weeks ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• MouseLand / rastermap
  a visualization method for neural data
  ☆236Updated 6 months ago
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆405Updated last month
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated 3 weeks ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆97Updated 10 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 8 months ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• nel-lab / FIOLA
  ☆34Updated 4 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆13Updated last week
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆40Updated 4 years ago
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆218Updated last month
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆175Updated 2 months ago
• simonarvin / braincoordinator
  Open-source stereotaxic coordinator
  ☆15Updated 2 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆62Updated last year
• mikarubi / voluseg
  pipeline for volumetric cell segmentation
  ☆13Updated 2 weeks ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆77Updated 5 months ago
• DeepLabCut / napari-deeplabcut
  a napari plugin for labeling and refining keypoint data within DeepLabCut projects
  ☆57Updated last week