nel-lab / mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
☆64Updated 3 months ago
Alternatives and similar repositories for mesmerize-core:
Users that are interested in mesmerize-core are comparing it to the libraries listed below
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆46Updated last year
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- Registration of cells across sessions.☆72Updated 5 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆129Updated last week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆85Updated 3 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- Fiber photometry analysis☆22Updated 2 months ago
- Histology processing☆64Updated 11 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 4 months ago
- ☆33Updated last year
- Algorithm for automated source extraction from 1P data☆21Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆70Updated 2 months ago
- ☆52Updated 5 months ago
- Widgets for calcium imaging analysis visualization in notebooks☆11Updated 4 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated last month
- pyqt5 dependent applications for IBL sessions☆25Updated last week
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- pynapple collaborative data analysis (high level python scripts)☆37Updated 10 months ago
- pipeline for volumetric cell segmentation☆12Updated last week
- Tools to work with Allen Inst CCF data in matlab☆127Updated 11 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated last year
- CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation☆21Updated 3 weeks ago
- A gui for browsing joint calcium imaging + behavioral data.☆51Updated 3 weeks ago
- Fiber Photometry Modular Analysis Tool Suite☆36Updated 3 years ago