nel-lab / mesmerize-coreLinks
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
☆70Updated 3 months ago
Alternatives and similar repositories for mesmerize-core
Users that are interested in mesmerize-core are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Registration of cells across sessions.☆75Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Histology processing☆71Updated 3 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- ☆52Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- a visualization method for neural data☆240Updated 8 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Region Of Interest Classification and Tracking☆27Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Pose estimation scripts to be run on the SWC HPC cluster☆12Updated 2 years ago
- ☆34Updated 7 months ago
- pipeline for volumetric cell segmentation☆13Updated 2 weeks ago
- Fast, volumetric cell detection. In development.☆20Updated last month
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆30Updated 2 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆42Updated 4 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆40Updated last week
- cell detection in calcium imaging recordings☆418Updated 3 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago