nel-lab / mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
☆59Updated last week
Related projects: ⓘ
- Platform for Calcium Imaging analysis. DEPRECATED.☆58Updated 9 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆41Updated last year
- miniscope analysis pipeline with interactive visualizations☆91Updated 2 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆61Updated 2 weeks ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆50Updated 4 months ago
- Registration of cells across sessions.☆67Updated 3 weeks ago
- Algorithm for automated source extraction from 1P data☆19Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆115Updated 3 weeks ago
- Histology processing☆61Updated 5 months ago
- Calcium Data Extraction and Analysis☆43Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆34Updated last year
- ☆51Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆65Updated this week
- Fiber photometry analysis☆19Updated 2 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆80Updated last month
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆96Updated 2 weeks ago
- Open-source stereotaxic coordinator☆14Updated last year
- Match suite2p ROIs between imaging sessions☆21Updated 5 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆24Updated 8 months ago
- ☆18Updated 7 months ago
- pipeline for volumetric cell segmentation☆10Updated this week
- Fiber Photometry Modular Analysis Tool Suite☆32Updated 3 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆27Updated 11 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆42Updated last week
- A gui for browsing joint calcium imaging + behavioral data.☆49Updated last month
- ☆29Updated 11 months ago
- Widgets for calcium imaging analysis visualization in notebooks☆10Updated 5 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆24Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆26Updated 4 years ago
- Tools to work with Allen Inst CCF data in matlab☆122Updated 6 months ago