Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆166May 29, 2026Updated last month
Alternatives and similar repositories for Cascade
Users that are interested in Cascade are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cell detection in calcium imaging recordings☆461Jul 1, 2026Updated 2 weeks ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- Deconvolution of calcium imaging data☆109Updated this week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆724Jun 27, 2026Updated 3 weeks ago
- A simple GUI for automatic and manual alignment across calcium imaging sessions.☆15Jul 2, 2026Updated 2 weeks ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- Registration of cells across sessions.☆78Jul 2, 2026Updated 2 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 4 months ago
- Stream data from PrairieView into MATLAB to allow online processing and analysis☆13Jan 1, 2024Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- ☆56Aug 30, 2024Updated last year
- Region Of Interest Classification and Tracking☆37Updated this week
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- Calcium imaging inter-session alignment☆17Jun 8, 2026Updated last month
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆99Jun 30, 2026Updated 3 weeks ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Apr 23, 2026Updated 2 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55May 10, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- This repository contains code for morphology-free analysis of functional fluorescence microscopy. The focal algorithm, Graph-Filtered Ti…☆16Nov 1, 2023Updated 2 years ago
- ☆35May 19, 2025Updated last year
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆110Oct 27, 2023Updated 2 years ago
- Fast spike sorting with drift correction☆623Apr 27, 2026Updated 2 months ago
- ☆224Jun 3, 2024Updated 2 years ago
- All things Miniscope v4☆155Apr 10, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- A Python package to visualise neuroanatomical data in atlas space☆663Updated this week
- CNN-ripple is a 1D convolutional neural network (CNN) operating over high-density LFP recordings to detect hippocampal SWR both offline a…☆18Nov 15, 2022Updated 3 years ago
- ☆42Sep 29, 2021Updated 4 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆126Jun 8, 2026Updated last month
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 4 years ago