HelmchenLabSoftware / CascadeLinks
Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆158Updated 2 weeks ago
Alternatives and similar repositories for Cascade
Users that are interested in Cascade are comparing it to the libraries listed below
Sorting:
- a visualization method for neural data☆241Updated 9 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆83Updated last year
- Registration of cells across sessions.☆75Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated this week
- Histology processing☆72Updated last month
- Tools to work with Allen Inst CCF data in matlab☆144Updated 6 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆140Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- ☆52Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆101Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- A curated list of awesome Neuropixels resources.☆124Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated last year
- Region Of Interest Classification and Tracking☆27Updated this week
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- Deconvolution of calcium imaging data☆104Updated last year
- Tools for processing 2P recordings☆131Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆62Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated last month
- Code for internal lab sharing - polishing has started but is by no means complete☆131Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year