HelmchenLabSoftware / Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆140Updated this week
Alternatives and similar repositories for Cascade:
Users that are interested in Cascade are comparing it to the libraries listed below
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- a visualization method for neural data☆222Updated last month
- Registration of cells across sessions.☆75Updated 8 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 4 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆114Updated 8 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 2 weeks ago
- NEural MOdelS, a statistical modeling framework for neuroscience.☆95Updated this week
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆87Updated 5 months ago
- WIP: Python port of Kilosort2☆50Updated last year
- Deconvolution of calcium imaging data☆93Updated 3 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆120Updated 3 months ago
- Histology processing☆65Updated 2 weeks ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆100Updated 4 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆87Updated 3 weeks ago
- Algorithm for automated source extraction from 1P data☆21Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year
- Region Of Interest Classification and Tracking☆18Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆165Updated last month
- A curated list of awesome Neuropixels resources.☆101Updated 2 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- cortex lab code for electrophysiology☆81Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated 2 months ago
- Tutorials for using SpikeInterface on extracellular datasets.☆62Updated last year
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated last month
- ☆51Updated 8 months ago
- Tools to work with Allen Inst CCF data in matlab☆132Updated last year
- Tools for processing 2P recordings☆125Updated last year
- Python package to handle probe layout, geometry and wiring to device.☆61Updated this week