HelmchenLabSoftware / CascadeLinks
Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆156Updated last month
Alternatives and similar repositories for Cascade
Users that are interested in Cascade are comparing it to the libraries listed below
Sorting:
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆81Updated 11 months ago
- a visualization method for neural data☆238Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆179Updated 3 months ago
- Registration of cells across sessions.☆75Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Histology processing☆71Updated 2 months ago
- ☆52Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 9 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆53Updated 2 years ago
- Tools to work with Allen Inst CCF data in matlab☆142Updated 4 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Region Of Interest Classification and Tracking☆27Updated this week
- Deconvolution of calcium imaging data☆101Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆78Updated 7 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆110Updated last month
- pyqt5 dependent applications for IBL sessions☆31Updated last month
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated last week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆110Updated this week
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆137Updated 4 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 2 months ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆67Updated this week
- Algorithm for automated source extraction from 1P data☆22Updated 2 years ago
- A curated list of awesome Neuropixels resources.☆118Updated 3 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year