HelmchenLabSoftware / CascadeLinks
Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆147Updated last month
Alternatives and similar repositories for Cascade
Users that are interested in Cascade are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri …☆75Updated 7 months ago
- a visualization method for neural data☆229Updated 3 months ago
- Registration of cells across sessions.☆75Updated 10 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- ☆52Updated 10 months ago
- Histology processing☆66Updated last month
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 5 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆126Updated 2 weeks ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Region Of Interest Classification and Tracking☆19Updated this week
- "Approaches to Study Neural Circuits" course☆65Updated 7 months ago
- IBL core shared libraries☆63Updated 2 weeks ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆55Updated this week
- pyqt5 dependent applications for IBL sessions☆28Updated last week
- WIP: Python port of Kilosort2☆51Updated 2 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆61Updated this week
- cell detection in calcium imaging recordings☆395Updated last month
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Updated last month
- Code for internal lab sharing - polishing has started but is by no means complete☆127Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆118Updated 10 months ago