HelmchenLabSoftware / CascadeLinks
Calibrated inference of spiking from calcium ΔF/F data using deep networks
☆157Updated last month
Alternatives and similar repositories for Cascade
Users that are interested in Cascade are comparing it to the libraries listed below
Sorting:
- a visualization method for neural data☆240Updated 9 months ago
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Registration of cells across sessions.☆75Updated last year
- Histology processing☆71Updated 3 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 5 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆79Updated 8 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- ☆52Updated last year
- SpikeGLX recording system GUI [Neuropixels NI]☆100Updated this week
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- Region Of Interest Classification and Tracking☆27Updated this week
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆122Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆139Updated 3 weeks ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- WIP: Python port of Kilosort2☆50Updated 2 years ago
- Algorithm for automated source extraction from 1P data☆23Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated this week
- "Approaches to Study Neural Circuits" course☆65Updated last year
- A curated list of awesome Neuropixels resources.☆121Updated 3 weeks ago
- pynapple collaborative data analysis (high level python scripts)☆38Updated last month