bahanonu / imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
☆47Updated last year
Alternatives and similar repositories for imaging_tools:
Users that are interested in imaging_tools are comparing it to the libraries listed below
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 10 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 4 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 3 months ago
- Histology processing☆65Updated this week
- miniscope analysis pipeline with interactive visualizations☆92Updated 7 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆133Updated this week
- Match suite2p ROIs between imaging sessions☆25Updated 5 years ago
- Registration of cells across sessions.☆73Updated 6 months ago
- ☆34Updated last year
- motion correction☆16Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- pipeline for volumetric cell segmentation☆12Updated 3 weeks ago
- Region Of Interest Classification and Tracking☆16Updated this week
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- ☆52Updated 6 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 8 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆17Updated 3 months ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆33Updated 2 weeks ago
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 5 months ago
- Tools to work with Allen Inst CCF data in matlab☆129Updated last year
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year