bahanonu / imaging_toolsLinks
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
☆49Updated last year
Alternatives and similar repositories for imaging_tools
Users that are interested in imaging_tools are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 6 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated this week
- ☆34Updated 2 weeks ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 10 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Histology processing☆65Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated this week
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 5 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆26Updated 3 years ago
- Registration of cells across sessions.☆75Updated 9 months ago
- motion correction☆17Updated 2 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 8 months ago
- ☆51Updated 9 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated 2 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- Activity Quantification and Analysis for molecular spatiotemporal signals☆24Updated last month
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Fiber Photometry Modular Analysis Tool Suite☆39Updated 3 years ago
- Fiber photometry analysis☆22Updated 2 months ago
- Calcium imaging inter-session alignment☆10Updated last week