A table containing imaging analysis tools for biology, with a focus on calcium imaging.
☆57Sep 15, 2023Updated 2 years ago
Alternatives and similar repositories for imaging_tools
Users that are interested in imaging_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆63Nov 26, 2023Updated 2 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Apr 23, 2026Updated 3 months ago
- ☆42Sep 29, 2021Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 5 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- cell detection in calcium imaging recordings☆467Updated this week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆16May 20, 2025Updated last year
- Analysis for spatially modulated spiking activity, e.g. place cells, grid cells☆22Feb 17, 2026Updated 5 months ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- Jax implementation of normcorre☆15Jan 25, 2025Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆167Updated this week
- Activity Quantification and Analysis for molecular spatiotemporal signals☆36Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Registration of cells across sessions.☆79Jul 2, 2026Updated last month
- Hennestad et al. 2022☆23Jun 8, 2026Updated 2 months ago
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆728Aug 2, 2026Updated last week
- pynapple collaborative data analysis (high level python scripts)☆39Dec 4, 2025Updated 8 months ago
- ☆35May 19, 2025Updated last year
- A GLM based approach to measure CFC☆16Oct 4, 2019Updated 6 years ago
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 6 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Aug 5, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Pre-processing pipeline for widefield data☆13Dec 11, 2020Updated 5 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 4 years ago
- This is where the Reiser Lab and colleagues are sharing tools and methods that are useful for lab experiments with _Drosophila_ neurobiol…☆19Aug 3, 2026Updated last week
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 10 months ago
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- ☆15May 24, 2021Updated 5 years ago
- Measurement control and analysis for super-resolution localization fluorescence microscopy☆15Feb 6, 2018Updated 8 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A repository of neural manifold techniques described and compared in "Neural manifold analysis of brain circuit dynamics in health and di…☆35Oct 6, 2023Updated 2 years ago
- Machine Learning Methods for Neural Data Analysis☆22May 16, 2025Updated last year
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- Python Implementation of Code for ANTS book (Cohen, 2012, MIT Press)☆24Mar 4, 2024Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- analysis tools for large-scale neural recordings☆17Apr 4, 2025Updated last year
- Visual Coding 2P analysis code☆18Jun 3, 2020Updated 6 years ago