A table containing imaging analysis tools for biology, with a focus on calcium imaging.
☆57Sep 15, 2023Updated 2 years ago
Alternatives and similar repositories for imaging_tools
Users that are interested in imaging_tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- ☆42Sep 29, 2021Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆88Mar 11, 2026Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Nov 14, 2024Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- cell detection in calcium imaging recordings☆446Updated this week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated 11 months ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Analysis for spatially modulated spiking activity, e.g. place cells, grid cells☆22Feb 17, 2026Updated 2 months ago
- Jax implementation of normcorre☆14Jan 25, 2025Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161Feb 11, 2026Updated 2 months ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆36Apr 27, 2026Updated last week
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Dimensionality reduction of calcium-imaged neuronal population activity☆16Feb 1, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Hennestad et al. 2022☆23Updated this week
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆721Apr 16, 2026Updated 2 weeks ago
- pynapple collaborative data analysis (high level python scripts)☆39Dec 4, 2025Updated 5 months ago
- ☆33May 19, 2025Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 5 years ago
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated 11 months ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12Apr 29, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pre-processing pipeline for widefield data☆12Dec 11, 2020Updated 5 years ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Mar 4, 2024Updated 2 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 3 years ago
- This is where the Reiser Lab and colleagues are sharing tools and methods that are useful for lab experiments with _Drosophila_ neurobiol…☆19Apr 24, 2025Updated last year
- Brainways☆23Aug 28, 2025Updated 8 months ago
- a visualization method for neural data☆247Apr 4, 2025Updated last year
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Apr 27, 2026Updated last week
- ☆15May 24, 2021Updated 4 years ago
- Python Implementation of Code for ANTS book (Cohen, 2012, MIT Press)☆23Mar 4, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Measurement control and analysis for super-resolution localization fluorescence microscopy☆15Feb 6, 2018Updated 8 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated 7 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Machine Learning Methods for Neural Data Analysis☆20May 16, 2025Updated 11 months ago
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated last month
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- Dense facial landmarks for thermal imaging☆16Dec 23, 2025Updated 4 months ago