bahanonu / imaging_tools
A table containing imaging analysis tools for biology, with a focus on calcium imaging.
☆49Updated last year
Alternatives and similar repositories for imaging_tools:
Users that are interested in imaging_tools are comparing it to the libraries listed below
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Calcium Data Extraction and Analysis☆43Updated 2 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated 11 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆29Updated 5 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 5 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last month
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆25Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 4 months ago
- Histology processing☆65Updated last month
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆138Updated this week
- Registration of cells across sessions.☆74Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆92Updated 8 months ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆25Updated 2 years ago
- motion correction☆17Updated 2 years ago
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- ☆34Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆36Updated 6 months ago
- For displaying spherically corrected visual stimulus on a flat screen.☆9Updated 3 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 7 years ago
- A GUI and library for doing multi-fiber photometry☆18Updated 7 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 9 months ago
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 weeks ago
- Fiber photometry analysis☆22Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- pipeline for volumetric cell segmentation☆12Updated 3 weeks ago
- ☆51Updated 7 months ago
- pyqt5 dependent applications for IBL sessions☆26Updated last month
- Multi-probe trajectory planning in an intuitive 3D environment☆52Updated this week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 6 months ago