Alternatives and similar repositories for ciatah:

Users that are interested in ciatah are comparing it to the libraries listed below

• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆92Updated 8 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆48Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆73Updated 7 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• zhoupc / OASIS_matlab
  ☆35Updated 3 years ago
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆59Updated 9 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆28Updated 4 years ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆71Updated 3 months ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 5 years ago
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆148Updated 2 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 6 months ago
• leomol / FPA
  Fiber photometry analysis
  ☆22Updated 3 months ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆145Updated 7 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆133Updated this week
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated last week
• petersaj / AP_histology
  Histology processing
  ☆65Updated last week
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆21Updated last year
• djamesbarker / pMAT
  Fiber Photometry Modular Analysis Tool Suite
  ☆36Updated 3 years ago
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆130Updated last year
• Whitlock-Group / HERBS
  ☆51Updated 6 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 10 months ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆36Updated 5 months ago
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• Coen-Lab / chronic-neuropixels
  CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation
  ☆21Updated 3 weeks ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆66Updated 2 weeks ago
• jenniferColonell / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆59Updated 2 weeks ago
• deisseroth-lab / multifiber
  A GUI and library for doing multi-fiber photometry
  ☆18Updated 7 years ago