CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
☆99Nov 14, 2024Updated last year
Alternatives and similar repositories for ciatah
Users that are interested in ciatah are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- ☆42Sep 29, 2021Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆89Mar 11, 2026Updated 2 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆161May 8, 2026Updated last week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆153Aug 2, 2024Updated last year
- cell detection in calcium imaging recordings☆448May 3, 2026Updated 2 weeks ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆156May 29, 2022Updated 3 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆721Apr 16, 2026Updated last month
- UCLA Multiphoton Miniature Microscope☆17May 19, 2025Updated last year
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Jul 14, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆65Jun 18, 2024Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 2 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆191Jan 26, 2026Updated 3 months ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆108Oct 27, 2023Updated 2 years ago
- a visualization method for neural data☆248Apr 4, 2025Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tools for processing 2P recordings☆133Oct 9, 2023Updated 2 years ago
- ☆33May 19, 2025Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 5 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Apr 23, 2026Updated 3 weeks ago
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- benchmarking challenge for finding neurons in imaging data☆76Apr 10, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17May 26, 2023Updated 2 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆45Aug 12, 2024Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Bash scripts to simplify your life (let's hope so!)☆12Jul 21, 2025Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆81Apr 16, 2025Updated last year
- ☆223Jun 3, 2024Updated last year
- Compression, denoising and demixing of functional imaging recordings☆29Jul 11, 2018Updated 7 years ago