bahanonu / ciatahLinks
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
☆90Updated 8 months ago
Alternatives and similar repositories for ciatah
Users that are interested in ciatah are comparing it to the libraries listed below
Sorting:
- ☆39Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆50Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆27Updated 3 years ago
- Histology processing☆66Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆60Updated last year
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated last year
- Registration of cells across sessions.☆75Updated 10 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆150Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- ☆52Updated 10 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 9 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- Tools for processing 2P recordings☆127Updated last year
- A gui for browsing joint calcium imaging + behavioral data.☆52Updated 5 months ago
- pyqt5 dependent applications for IBL sessions☆28Updated last week
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆36Updated 2 weeks ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆55Updated this week
- Calcium imaging inter-session alignment☆11Updated 2 weeks ago
- Bonsai package for controlling headborne, calcium imaging miniscopes☆12Updated last year
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago