bahanonu / ciatahLinks
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
☆95Updated 10 months ago
Alternatives and similar repositories for ciatah
Users that are interested in ciatah are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Registration of cells across sessions.☆75Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆52Updated 2 years ago
- ☆40Updated 3 years ago
- Histology processing☆69Updated last week
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- ☆52Updated last year
- Tools to work with Allen Inst CCF data in matlab☆140Updated 2 months ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆152Updated 3 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆62Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 11 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 5 months ago
- a visualization method for neural data☆236Updated 5 months ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆175Updated last month
- Tools for processing 2P recordings☆127Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆120Updated last year
- pyqt5 dependent applications for IBL sessions☆29Updated 3 weeks ago
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆131Updated 2 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- SpikeGLX recording system GUI [Neuropixels NI]☆96Updated this week
- Code for internal lab sharing - polishing has started but is by no means complete☆129Updated last year
- pynapple collaborative data analysis (high level python scripts)☆37Updated last year