bahanonu / ciatahView external linksLinks
CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: https://git.io/ciatah_docs. Formerly known as calciumImagingAnalysis (ciapkg).
☆99Nov 14, 2024Updated last year
Alternatives and similar repositories for ciatah
Users that are interested in ciatah are comparing it to the libraries listed below
Sorting:
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Registration of cells across sessions.☆76Aug 20, 2024Updated last year
- ☆41Sep 29, 2021Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆84Dec 10, 2024Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated this week
- Matlab routines for online non-rigid motion correction of calcium imaging data☆153May 29, 2022Updated 3 years ago
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- cell detection in calcium imaging recordings☆428Updated this week
- UCLA Multiphoton Miniature Microscope☆16May 19, 2025Updated 8 months ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆713Updated this week
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Jul 4, 2023Updated 2 years ago
- Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…☆18Jul 14, 2019Updated 6 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆104Oct 27, 2023Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated 2 weeks ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Jun 18, 2024Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Dec 21, 2023Updated 2 years ago
- a visualization method for neural data☆241Apr 4, 2025Updated 10 months ago
- Tools for processing 2P recordings☆131Oct 9, 2023Updated 2 years ago
- ☆34May 19, 2025Updated 8 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Jul 11, 2018Updated 7 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28May 22, 2022Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆98Jul 19, 2024Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- ☆17May 26, 2023Updated 2 years ago
- benchmarking challenge for finding neurons in imaging data☆75Apr 10, 2019Updated 6 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆43Aug 12, 2024Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆15Mar 7, 2025Updated 11 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Jan 31, 2026Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Apr 16, 2025Updated 9 months ago
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 5 years ago
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago