cortex-lab / Suite2PLinks
Tools for processing 2P recordings
☆127Updated last year
Alternatives and similar repositories for Suite2P
Users that are interested in Suite2P are comparing it to the libraries listed below
Sorting:
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆135Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆256Updated 2 years ago
- Registration of cells across sessions.☆75Updated 10 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆31Updated 5 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆147Updated last month
- miniscope analysis pipeline with interactive visualizations☆94Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆90Updated 8 months ago
- Deconvolution of calcium imaging data☆96Updated 5 months ago
- cell detection in calcium imaging recordings☆393Updated last month
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆60Updated last year
- a visualization method for neural data☆229Updated 3 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆90Updated last week
- Match suite2p ROIs between imaging sessions☆26Updated 6 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆74Updated 3 months ago
- Functions to assess quality of spike sorting results☆34Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆75Updated 7 months ago
- Histology processing☆66Updated last month
- ☆39Updated 3 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆169Updated 3 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆118Updated 10 months ago
- GPU code for spike sorting☆185Updated last year
- WIP: Python port of Kilosort2☆51Updated 2 years ago
- A Python API for working with Neurodata stored in the NWB Format☆195Updated last week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆126Updated 2 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆48Updated 2 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆103Updated 7 months ago
- JRCLUST☆35Updated last year
- pyqt5 dependent applications for IBL sessions☆28Updated last week