Alternatives and similar repositories for Suite2P

Users that are interested in Suite2P are comparing it to the libraries listed below

• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆148Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• cortex-lab / allenCCF
  Tools to work with Allen Inst CCF data in matlab
  ☆143Updated 5 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆103Updated 11 months ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆33Updated 5 years ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆240Updated 8 months ago
• flatironinstitute / CaImAn-MATLAB
  Complete Matlab pipeline for large scale calcium imaging data analysis
  ☆259Updated 2 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• cortex-lab / KiloSort
  GPU code for spike sorting
  ☆189Updated last year
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated 2 years ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆100Updated last week
• JinghaoLu / MIN1PIPE
  A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.
  ☆63Updated last year
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆82Updated last year
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆79Updated 8 months ago
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆138Updated last week
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆32Updated 2 months ago
• petersaj / AP_histology
  Histology processing
  ☆71Updated last week
• MouseLand / suite2p
  cell detection in calcium imaging recordings
  ☆417Updated 3 months ago
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated 2 years ago
• cortex-lab / spikes
  cortex lab code for electrophysiology
  ☆85Updated last year
• djoshea / neuropixel-utils
  Utilities for managing Neuropixel datasets and Kilosort results
  ☆48Updated 7 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 3 months ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆66Updated this week
• Whitlock-Group / HERBS
  ☆52Updated last year
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆181Updated 5 months ago