cortex-lab / Suite2P
Tools for processing 2P recordings
☆124Updated last year
Alternatives and similar repositories for Suite2P:
Users that are interested in Suite2P are comparing it to the libraries listed below
- Registration of cells across sessions.☆72Updated 6 months ago
- Tools to work with Allen Inst CCF data in matlab☆128Updated 11 months ago
- miniscope analysis pipeline with interactive visualizations☆93Updated 7 months ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆144Updated 7 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆85Updated this week
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆73Updated 5 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆86Updated 3 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆253Updated last year
- Utilities for managing Neuropixel datasets and Kilosort results☆46Updated last year
- Histology processing☆65Updated 11 months ago
- Deconvolution of calcium imaging data☆88Updated last month
- ☆52Updated 6 months ago
- cortex lab code for electrophysiology☆79Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆130Updated 2 weeks ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆112Updated 6 months ago
- pyqt5 dependent applications for IBL sessions☆25Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆57Updated this week
- WIP: Python port of Kilosort2☆50Updated last year
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 8 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆71Updated 2 months ago
- A curated list of awesome Neuropixels resources.☆89Updated 3 weeks ago
- Archived code for reading data saved by the Open Ephys GUI☆59Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆32Updated last year
- NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…☆114Updated last month
- Code for internal lab sharing - polishing has started but is by no means complete☆125Updated last year
- a visualization method for neural data☆208Updated 4 months ago
- Match suite2p ROIs between imaging sessions☆24Updated 5 years ago
- ☆35Updated 3 years ago