cortex-lab / Suite2P
Tools for processing 2P recordings
☆122Updated last year
Related projects ⓘ
Alternatives and complementary repositories for Suite2P
- Registration of cells across sessions.☆70Updated 3 months ago
- Tools to work with Allen Inst CCF data in matlab☆124Updated 8 months ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆140Updated 3 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆123Updated 3 weeks ago
- SpikeGLX recording system GUI [Neuropixels NI]☆83Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆61Updated 11 months ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 5 months ago
- miniscope analysis pipeline with interactive visualizations☆91Updated 4 months ago
- pyqt5 dependent applications for IBL sessions☆25Updated last week
- cortex lab code for electrophysiology☆74Updated 9 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆65Updated 2 weeks ago
- Utilities for managing Neuropixel datasets and Kilosort results☆45Updated last year
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆54Updated 3 weeks ago
- Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data☆91Updated 2 years ago
- Deconvolution of calcium imaging data☆84Updated 2 months ago
- A curated list of awesome Neuropixels resources.☆77Updated this week
- a visualization method for neural data☆195Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆28Updated 4 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆69Updated 2 months ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆109Updated 3 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆252Updated last year
- Histology processing☆64Updated 8 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆83Updated last week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆96Updated 3 weeks ago
- GPU code for spike sorting☆179Updated 9 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆61Updated 3 weeks ago
- WIP: Python port of Kilosort2☆50Updated last year
- JRCLUST☆34Updated 6 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆45Updated last year
- [This repository is archived, will be deprecated after the release of phy 2.0]☆30Updated 5 years ago