Alternatives and similar repositories for FIOLA

Users that are interested in FIOLA are comparing it to the libraries listed below

• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated last year
• adamshch / SEUDO
  ☆8Updated 3 years ago
• Whitlock-Group / HERBS
  ☆52Updated 10 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆50Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆44Updated 2 years ago
• yu-lab-vt / AQuA2
  Activity Quantification and Analysis for molecular spatiotemporal signals
  ☆25Updated 3 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆94Updated 11 months ago
• EricThomson / CCN_caiman_mesmerize_workshop_2023
  Repo for CCN workshop on caiman and mesmerize in January 2023
  ☆13Updated 2 years ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆68Updated last month
• PolarBean / DeepSlice
  A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.
  ☆98Updated 2 weeks ago
• brainglobe / brainglobe-segmentation
  Segmentation of anatomical structures in a common coordinate space
  ☆33Updated last week
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated 3 weeks ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆147Updated last month
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• bkntr / brainways
  Brainways
  ☆18Updated last month
• brainglobe / cellfinder
  Automated 3D cell detection in very large images
  ☆216Updated last week
• brainglobe / brainglobe-atlasapi
  A Python interface to access neuroanatomical atlases
  ☆154Updated last week
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• albert597 / TRAILMAP
  ☆45Updated 5 years ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆90Updated 8 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆43Updated last week
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 9 months ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆11Updated 2 weeks ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆31Updated 5 years ago
• fdechaumont / lmt-analysis
  Live Mouse Tracker analysis
  ☆31Updated last month
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆14Updated last week