nel-lab / FIOLALinks
☆34Updated 8 months ago
Alternatives and similar repositories for FIOLA
Users that are interested in FIOLA are comparing it to the libraries listed below
Sorting:
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- ☆52Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆55Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated last week
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Updated 2 years ago
- Activity Quantification and Analysis for molecular spatiotemporal signals☆34Updated last month
- Segmentation of anatomical structures in a common coordinate space☆35Updated last week
- Brainways☆22Updated 5 months ago
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- ☆46Updated 5 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆113Updated 5 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 3 weeks ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Automated 3D cell detection in very large images☆224Updated last week
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Repository for BehaviorDEPOT pipeline app files and source code☆41Updated last month
- Histology processing☆72Updated last month
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆17Updated 10 months ago
- A Python interface to access neuroanatomical atlases☆172Updated this week
- Automated 3D brain registration with support for multiple species and atlases.☆144Updated last week
- a napari plugin for labeling and refining keypoint data within DeepLabCut projects☆60Updated this week
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Updated 2 years ago
- Read and write files from the BrainGlobe neuroanatomy suite☆15Updated last week
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆47Updated last week
- ☆18Updated 4 years ago
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆82Updated this week