Alternatives and similar repositories for MESmerize:

Users that are interested in MESmerize are comparing it to the libraries listed below

• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆66Updated 2 months ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆49Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆87Updated 5 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 9 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated 8 months ago
• petersaj / AP_histology
  Histology processing
  ☆65Updated 2 weeks ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆18Updated last week
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆73Updated 4 months ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆73Updated 2 weeks ago
• inscopix / inscopix-cnmfe
  Algorithm for automated source extraction from 1P data
  ☆21Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆25Updated 6 years ago
• Whitlock-Group / HERBS
  ☆51Updated 8 months ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆140Updated this week
• sanworks / Bpod_Gen2
  Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)
  ☆34Updated last month
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆29Updated 5 years ago
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated 7 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆26Updated 3 weeks ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆53Updated 11 months ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆44Updated 2 years ago
• nel-lab / FIOLA
  ☆34Updated last year
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆100Updated 4 months ago
• PeyracheLab / pynacollada
  pynapple collaborative data analysis (high level python scripts)
  ☆37Updated last year
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆57Updated this week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆25Updated last month
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆51Updated 3 months ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆52Updated 2 weeks ago
• MouseLand / pykilosort
  WIP: Python port of Kilosort2
  ☆50Updated last year
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆25Updated last year
• m-beau / NeuroPyxels
  NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a…
  ☆120Updated 3 months ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆29Updated last year