kushalkolar / MESmerizeLinks
Platform for Calcium Imaging analysis. DEPRECATED.
☆62Updated 2 years ago
Alternatives and similar repositories for MESmerize
Users that are interested in MESmerize are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆98Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- ☆52Updated last year
- Registration of cells across sessions.☆75Updated last year
- Histology processing☆72Updated last month
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Region Of Interest Classification and Tracking☆27Updated last week
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Browser-based NWB visualization and DANDI exploration☆62Updated last month
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Web app for viewing results of ephys spike sorting☆27Updated 4 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 2 weeks ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆46Updated 2 weeks ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Updated 9 months ago
- A gui for browsing joint calcium imaging + behavioral data.☆54Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- pyqt5 dependent applications for IBL sessions☆32Updated 3 months ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated 2 weeks ago
- a visualization method for neural data☆241Updated 9 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆111Updated 3 months ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- motion correction☆17Updated 2 years ago
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated last week
- ☆34Updated 8 months ago