kushalkolar / MESmerizeLinks
Platform for Calcium Imaging analysis. DEPRECATED.
☆62Updated last year
Alternatives and similar repositories for MESmerize
Users that are interested in MESmerize are comparing it to the libraries listed below
Sorting:
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆51Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 3 months ago
- ☆52Updated last year
- Histology processing☆69Updated last month
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- Registration of cells across sessions.☆75Updated last year
- Browser-based NWB visualization and DANDI exploration☆59Updated this week
- Algorithm for automated source extraction from 1P data☆21Updated 2 years ago
- Web app for viewing results of ephys spike sorting☆26Updated 2 weeks ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆77Updated 8 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated last year
- Region Of Interest Classification and Tracking☆24Updated last week
- Repository for BehaviorDEPOT pipeline app files and source code☆38Updated 10 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆103Updated this week
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆105Updated 8 months ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆76Updated 4 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Rendering anatomical heatmaps with brainrender and matplotlib☆44Updated 3 weeks ago
- ☆34Updated 3 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆93Updated last week
- Open-source stereotaxic coordinator☆15Updated 2 years ago
- Multi-probe trajectory planning in an intuitive 3D environment☆56Updated this week
- Calcium imaging inter-session alignment☆11Updated 3 weeks ago
- a visualization method for neural data☆235Updated 4 months ago
- Tools to work with Allen Inst CCF data in matlab☆139Updated last month
- IBL core shared libraries☆63Updated this week