kushalkolar / MESmerizeView external linksLinks
Platform for Calcium Imaging analysis. DEPRECATED.
☆62Nov 26, 2023Updated 2 years ago
Alternatives and similar repositories for MESmerize
Users that are interested in MESmerize are comparing it to the libraries listed below
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆713Updated this week
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Jan 31, 2026Updated last week
- Algorithm for automated source extraction from 1P data☆23Jun 16, 2023Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated this week
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆15May 20, 2025Updated 8 months ago
- Repo for CCN workshop on caiman and mesmerize in January 2023☆13Mar 3, 2023Updated 2 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Nov 14, 2024Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Dec 21, 2023Updated 2 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆15Feb 5, 2026Updated last week
- cell detection in calcium imaging recordings☆428Updated this week
- Registration of cells across sessions.☆76Aug 20, 2024Updated last year
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 6 years ago
- A Matlab application for electrophysiology data analysis☆21Apr 4, 2025Updated 10 months ago
- Widgets for calcium imaging analysis visualization in notebooks☆13Oct 19, 2024Updated last year
- ☆34May 19, 2025Updated 8 months ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆84Dec 10, 2024Updated last year
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 5 years ago
- Adaptive Platform for Neuroscience Experiments☆43Nov 18, 2025Updated 2 months ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 6 years ago
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- Tool to help inspect NWB files for compliance with NWB Best Practices☆21Updated this week
- Image processing and tools for widefield imaging☆19Dec 7, 2019Updated 6 years ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆20Dec 16, 2025Updated last month
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆33Jan 19, 2026Updated 3 weeks ago
- Region Of Interest Classification and Tracking☆27Feb 5, 2026Updated last week
- NEural MOdelS, a statistical modeling framework for neuroscience.☆120Feb 6, 2026Updated last week
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆185Jan 26, 2026Updated 2 weeks ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆14Feb 4, 2026Updated last week
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆62Jul 1, 2023Updated 2 years ago
- IaC codebase for the NeuroCAAS Platform☆39Dec 15, 2023Updated 2 years ago
- ☆10Jun 4, 2025Updated 8 months ago
- Calcium imaging inter-session alignment☆16Dec 18, 2025Updated last month
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Schemata and libraries for neuroscientific data☆33Sep 17, 2025Updated 4 months ago
- Web app for viewing results of ephys spike sorting☆27Sep 4, 2025Updated 5 months ago
- Voltage imaging analysis in python☆10May 25, 2021Updated 4 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago