Alternatives and similar repositories for MESmerize

Users that are interested in MESmerize are comparing it to the libraries listed below

• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆70Updated 2 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆96Updated last year
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆53Updated 2 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆156Updated last month
• Whitlock-Group / HERBS
  ☆52Updated last year
• petersaj / AP_histology
  Histology processing
  ☆71Updated 2 months ago
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• brainglobe / brainglobe-heatmap
  Rendering anatomical heatmaps with brainrender and matplotlib
  ☆46Updated 2 weeks ago
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆47Updated 2 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• ryhattori / PatchWarp
  Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.
  ☆26Updated last year
• DeNardoLab / BehaviorDEPOT
  Repository for BehaviorDEPOT pipeline app files and source code
  ☆38Updated last year
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆27Updated this week
• magland / sortingview
  Web app for viewing results of ephys spike sorting
  ☆27Updated 2 months ago
• flatironinstitute / neurosift
  Browser-based NWB visualization and DANDI exploration
  ☆60Updated this week
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆56Updated this week
• nel-lab / FIOLA
  ☆34Updated 6 months ago
• schnitzer-lab / EXTRACT-public
  EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…
  ☆81Updated 11 months ago
• LorenFrankLab / spyglass
  Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF
  ☆105Updated this week
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆67Updated this week
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆110Updated last month
• NTCColumbia / moco
  motion correction
  ☆17Updated 2 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• petersaj / neuropixels_trajectory_explorer
  Neuropixels trajectory explorer with the Allen CCF mouse atlas
  ☆78Updated 7 months ago
• int-brain-lab / iblapps
  pyqt5 dependent applications for IBL sessions
  ☆31Updated last month
• PeyracheLab / miniscoPy
  A package to analyse calcium imaging data recorded with the Miniscope.
  ☆33Updated 3 years ago
• CaliAli-PV / CaliAli
  Calcium imaging inter-session alignment
  ☆13Updated 3 weeks ago
• MouseLand / facemap
  Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…
  ☆179Updated 3 months ago
• neuroethology / bentoMAT
  A gui for browsing joint calcium imaging + behavioral data.
  ☆54Updated 9 months ago