Platform for Calcium Imaging analysis. DEPRECATED.
☆63Nov 26, 2023Updated 2 years ago
Alternatives and similar repositories for MESmerize
Users that are interested in MESmerize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆68Apr 23, 2026Updated 3 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆726Jun 27, 2026Updated last month
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆16May 20, 2025Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆166May 29, 2026Updated 2 months ago
- Widgets for calcium imaging analysis visualization in notebooks☆13Oct 19, 2024Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- cell detection in calcium imaging recordings☆463Jul 1, 2026Updated 3 weeks ago
- Registration of cells across sessions.☆78Jul 2, 2026Updated 3 weeks ago
- ☆35May 19, 2025Updated last year
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 6 years ago
- Python Neural Analysis Visualization☆18Jul 16, 2026Updated last week
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 4 months ago
- Adaptive Platform for Neuroscience Experiments☆44Nov 18, 2025Updated 8 months ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Jul 20, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Voltage imaging analysis in python☆10May 25, 2021Updated 5 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Jul 13, 2026Updated 2 weeks ago
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆14Jun 3, 2025Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Next-gen fast plotting library running on WGPU using the pygfx rendering engine☆1,520Updated this week
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Region Of Interest Classification and Tracking☆37Updated this week
- Web app for viewing results of ephys spike sorting☆29Sep 4, 2025Updated 10 months ago
- Code for Inception Loop 2019 Paper☆19Dec 12, 2019Updated 6 years ago
- Free, platform independent, behavior tracking software.☆147Jun 20, 2025Updated last year