Platform for Calcium Imaging analysis. DEPRECATED.
☆63Nov 26, 2023Updated 2 years ago
Alternatives and similar repositories for MESmerize
Users that are interested in MESmerize are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆57Sep 15, 2023Updated 2 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Apr 23, 2026Updated 3 months ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆731Aug 2, 2026Updated 2 weeks ago
- Algorithm for automated source extraction from 1P data☆24Jun 16, 2023Updated 3 years ago
- DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT☆16May 20, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Aug 9, 2026Updated last week
- Widgets for calcium imaging analysis visualization in notebooks☆13Oct 19, 2024Updated last year
- Repo for CCN workshop on caiman and mesmerize in January 2023☆12Mar 3, 2023Updated 3 years ago
- Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)☆29Dec 8, 2022Updated 3 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- cell detection in calcium imaging recordings☆468Aug 10, 2026Updated last week
- Registration of cells across sessions.☆79Jul 2, 2026Updated last month
- ☆36May 19, 2025Updated last year
- A Matlab application for electrophysiology data analysis☆22Apr 4, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Decoding behavior from calcium imaging data☆16Jun 18, 2020Updated 6 years ago
- Python Neural Analysis Visualization☆19Jul 16, 2026Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 5 months ago
- Adaptive Platform for Neuroscience Experiments☆45Nov 18, 2025Updated 9 months ago
- Image processing and tools for widefield imaging☆20Dec 7, 2019Updated 6 years ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 7 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Voltage imaging analysis in python☆11May 25, 2021Updated 5 years ago
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Aug 10, 2026Updated last week
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆14Jun 3, 2025Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 3 years ago
- Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).☆13May 2, 2022Updated 4 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆199Jan 26, 2026Updated 6 months ago
- Lightweight data specification for systems neuroscience, inspired by BIDS.☆23Jul 14, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Next-gen fast plotting library running on WGPU using the pygfx rendering engine☆1,522Updated this week
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Region Of Interest Classification and Tracking☆38Updated this week
- Web app for viewing results of ephys spike sorting☆29Sep 4, 2025Updated 11 months ago
- Code for Inception Loop 2019 Paper☆20Dec 12, 2019Updated 6 years ago
- Free, platform independent, behavior tracking software.☆148Updated this week