flatironinstitute / NoRMCorreLinks
Matlab routines for online non-rigid motion correction of calcium imaging data
☆153Updated 3 years ago
Alternatives and similar repositories for NoRMCorre
Users that are interested in NoRMCorre are comparing it to the libraries listed below
Sorting:
- Complete Matlab pipeline for large scale calcium imaging data analysis☆259Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆41Updated 4 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆56Updated 2 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆151Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Tools for processing 2P recordings☆131Updated 2 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆64Updated last year
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Calcium Data Extraction and Analysis☆49Updated 3 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆158Updated 2 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Single photon tools for Neuroscience☆36Updated 2 months ago
- Registration of cells across sessions.☆75Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Voltage imaging analysis in python☆10Updated 4 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated this week
- cell detection in calcium imaging recordings☆423Updated 4 months ago
- Pre-processing pipeline for widefield data☆12Updated 5 years ago
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Tools to work with Allen Inst CCF data in matlab☆143Updated 6 months ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆70Updated 4 months ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated 2 years ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆26Updated 2 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- a visualization method for neural data☆241Updated 9 months ago