flatironinstitute / NoRMCorreLinks
Matlab routines for online non-rigid motion correction of calcium imaging data
☆151Updated 3 years ago
Alternatives and similar repositories for NoRMCorre
Users that are interested in NoRMCorre are comparing it to the libraries listed below
Sorting:
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆89Updated 6 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆256Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated 10 months ago
- ☆36Updated 3 years ago
- Tools for processing 2P recordings☆125Updated last year
- miniscope analysis pipeline with interactive visualizations☆93Updated 10 months ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆49Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆73Updated 5 months ago
- Calcium Data Extraction and Analysis☆44Updated 2 years ago
- Registration of cells across sessions.☆75Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆144Updated this week
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆59Updated 11 months ago
- Tools to work with Allen Inst CCF data in matlab☆134Updated last year
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆53Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆30Updated 5 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆66Updated last week
- Code for internal lab sharing - polishing has started but is by no means complete☆127Updated last year
- Platform for Calcium Imaging analysis. DEPRECATED.☆60Updated last year
- motion correction☆17Updated 2 years ago
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆123Updated last year
- Match suite2p ROIs between imaging sessions☆25Updated 6 years ago
- Single photon tools for Neuroscience☆35Updated last year
- pipeline for volumetric cell segmentation☆12Updated 2 months ago
- Pre-processing pipeline for widefield data☆11Updated 4 years ago
- Deconvolution of calcium imaging data☆95Updated 4 months ago
- CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…☆102Updated 5 months ago
- Browser-based NWB visualization and DANDI exploration☆57Updated 2 weeks ago
- Histology processing☆65Updated last month
- Repository for 2nd generation Bpod platform (formerly beta branch of Bpod repository)☆34Updated 2 months ago