flatironinstitute / NoRMCorreLinks
Matlab routines for online non-rigid motion correction of calcium imaging data
☆153Updated 3 years ago
Alternatives and similar repositories for NoRMCorre
Users that are interested in NoRMCorre are comparing it to the libraries listed below
Sorting:
- Complete Matlab pipeline for large scale calcium imaging data analysis☆259Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆82Updated 11 months ago
- ☆41Updated 4 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆148Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆55Updated 2 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆63Updated last year
- Tools for processing 2P recordings☆130Updated 2 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆157Updated 2 weeks ago
- Single photon tools for Neuroscience☆36Updated last month
- Calcium Data Extraction and Analysis☆48Updated 3 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- Control and design of two-photon photostimulation experiments☆17Updated last year
- cell detection in calcium imaging recordings☆417Updated 3 months ago
- Registration of cells across sessions.☆75Updated last year
- Tools to work with Allen Inst CCF data in matlab☆143Updated 4 months ago
- motion correction☆17Updated 2 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- Pre-processing pipeline for widefield data☆12Updated 4 years ago
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Updated 5 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 4 months ago
- Software for streaming and controlling neural and behavioral data from freely behaving animals☆127Updated last year
- Tools to register histological section images and cell count locations to mouse brain atlas☆28Updated 3 years ago
- Serial-section automated anatomy extension for ScanImage☆17Updated last month
- a visualization method for neural data☆239Updated 8 months ago
- SpikeGLX recording system GUI [Neuropixels NI]☆99Updated this week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated 2 weeks ago