Matlab routines for online non-rigid motion correction of calcium imaging data
☆159May 29, 2022Updated 4 years ago
Alternatives and similar repositories for NoRMCorre
Users that are interested in NoRMCorre are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Complete Matlab pipeline for large scale calcium imaging data analysis☆261Jul 4, 2023Updated 3 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆154Aug 2, 2024Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆738Updated this week
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Sep 9, 2026Updated 2 weeks ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆43Sep 29, 2021Updated 4 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- Python package for analysis of dynamic fluorescence microscopy data☆106Mar 14, 2019Updated 7 years ago
- TENASPIS☆10Feb 15, 2021Updated 5 years ago
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 6 months ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Apr 11, 2022Updated 4 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- Registration of cells across sessions.☆79Jul 2, 2026Updated 2 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆36Apr 9, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- cell detection in calcium imaging recordings☆473Sep 12, 2026Updated 2 weeks ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Sep 17, 2026Updated last week
- Calcium Data Extraction and Analysis☆50Dec 5, 2022Updated 3 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54May 10, 2024Updated 2 years ago
- ☆224Jun 3, 2024Updated 2 years ago
- Flow-Registration toolbox for 2P motion compensation☆27Sep 16, 2025Updated last year
- Denoising and Demixing Pipeline for in vivo Voltage Imaging Data (SGPMD-NMF)☆15Apr 24, 2023Updated 3 years ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- Parameter-free statistical testing package☆12Jul 7, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- motion correction☆17Jan 27, 2023Updated 3 years ago
- A Matlab interface for reading and writing NWB files☆62Updated this week
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 3 years ago
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- Seeded Iterative Demixing (SID) of neuronal activity recordings made using Light Field Microscopy (LFM)☆28Feb 26, 2020Updated 6 years ago
- Single photon tools for Neuroscience☆36Oct 29, 2025Updated 10 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆27Aug 18, 2018Updated 8 years ago
- The code takes as an input a time series vector of calcium observationsand produces samples from the posterior distribution of the underl…☆21Oct 21, 2016Updated 9 years ago
- A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.☆66Jun 18, 2024Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- BonVision is an open-source closed-loop visual environment generator developed by the Saleem Lab and Solomon Lab at the UCL Institute of …☆14Jun 3, 2025Updated last year
- Config and scripts used to run a Nikon Eclipse Ti in the vanNimwegen lab.☆23Jul 8, 2024Updated 2 years ago
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆46Aug 12, 2024Updated 2 years ago
- Compression, denoising and demixing of functional imaging recordings☆31Jul 11, 2018Updated 8 years ago
- Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also incl…☆203Jan 26, 2026Updated 8 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 7 years ago
- ActSort is an active learning accelerated cell sorter tool for calcium imaging.☆27Apr 27, 2026Updated 5 months ago