Alternatives and similar repositories for Toolbox-Romano-et-al

Users that are interested in Toolbox-Romano-et-al are comparing it to the libraries listed below

• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆101Updated 9 months ago
• ikinsella / locaNMF
  Pytorch implementation of LocaNMF
  ☆36Updated 5 years ago
• zhoupc / OASIS_matlab
  ☆40Updated 4 years ago
• RichieHakim / ROICaT
  Region Of Interest Classification and Tracking
  ☆26Updated this week
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆128Updated 2 years ago
• paninski-lab / funimag
  Compression, denoising and demixing of functional imaging recordings
  ☆28Updated 7 years ago
• MLspike / spikes
  spike extraction from calcium signals (Deneux et al., 2016)
  ☆32Updated 5 years ago
• zhoupc / CNMF_E
  Constrained Nonnegative Matrix Factorization for microEndoscopic data
  ☆147Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆98Updated 11 months ago
• gardner-lab / FinchScope
  Single photon tools for Neuroscience
  ☆36Updated last year
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆152Updated last week
• joao-semedo / communication-subspace
  Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)
  ☆47Updated 6 years ago
• int-brain-lab / ibllib
  IBL core shared libraries
  ☆63Updated this week
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆34Updated 2 years ago
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 6 years ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆95Updated last year
• zivlab / island
  Revealing neural correlates of behavior without behavioral measurements
  ☆15Updated 5 years ago
• nsteinme / steinmetz-et-al-2019
  Code accompanying Steinmetz et al., 2019
  ☆60Updated 4 years ago
• cunningham-lab / neurocaas
  IaC codebase for the NeuroCAAS Platform
  ☆38Updated last year
• zivlab / CellReg
  Registration of cells across sessions.
  ☆75Updated last year
• AllenInstitute / ecephys_spike_sorting
  Modules for processing extracellular electrophysiology data from Neuropixels probes
  ☆122Updated last year
• pillowlab / GLMspiketools
  Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
  ☆43Updated 6 years ago
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆27Updated 6 years ago
• paninski-lab / yass
  YASS: Yet Another Spike Sorter
  ☆70Updated 3 years ago
• nelpy / nelpy
  Neuroelectrophysiology object model and data analysis in Python.
  ☆50Updated 2 months ago
• SjulsonLab / methods_class
  "Approaches to Study Neural Circuits" course
  ☆66Updated 10 months ago
• MouseLand / rastermap
  a visualization method for neural data
  ☆238Updated 6 months ago
• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆62Updated last year
• cortex-lab / Rigbox
  A MATLAB toolbox for running behavioral neuroscience experiments and managing data
  ☆32Updated last year
• benengx / encodingmodel
  Generate a matrix of predictors corresponding to different behavioral variables and process a regression-based encoding model to obtain t…
  ☆18Updated 6 years ago