zebrain-lab / Toolbox-Romano-et-alLinks
Computational toolbox for analysis of calcium imaging data of neuronal populations
☆33Updated last year
Alternatives and similar repositories for Toolbox-Romano-et-al
Users that are interested in Toolbox-Romano-et-al are comparing it to the libraries listed below
Sorting:
- Deconvolution of calcium imaging data☆98Updated 7 months ago
- IBL core shared libraries☆63Updated this week
- ☆40Updated 3 years ago
- Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).☆43Updated 6 years ago
- Revealing neural correlates of behavior without behavioral measurements☆15Updated 5 years ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 2 weeks ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data☆94Updated 3 years ago
- Functions to assess quality of spike sorting results☆34Updated last year
- Code accompanying Steinmetz et al., 2019☆60Updated 4 years ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- YASS: Yet Another Spike Sorter☆70Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 2 weeks ago
- Code for "Cortical areas interact through a communication subspace", Semedo et al. (Neuron, 2019)☆47Updated 5 years ago
- Tools for processing 2P recordings☆127Updated last year
- Region Of Interest Classification and Tracking☆24Updated this week
- Recordings of 10k neurons during spontaneous behaviors☆52Updated last year
- a Python machine learning library for neurophysiology data☆36Updated 6 years ago
- Keras network for spike detection from calcium traces☆12Updated 5 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood☆19Updated 7 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).☆71Updated 5 years ago
- Modules for processing extracellular electrophysiology data from Neuropixels probes☆119Updated last year
- Coding exercises for Neural Data Science at CSHL in 2019☆29Updated 5 years ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- "Approaches to Study Neural Circuits" course☆66Updated 8 months ago