alexklibisz / deep-calciumLinks
Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
☆29Updated 3 years ago
Alternatives and similar repositories for deep-calcium
Users that are interested in deep-calcium are comparing it to the libraries listed below
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 6 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Automated 3D brain registration with support for multiple species and atlases.☆141Updated last week
- Dendritic Spine Analysis Software☆13Updated 2 years ago
- Developing a Brain Atlas through Deep Learning☆53Updated 4 months ago
- 3-D imaging visualisation through slicing☆31Updated 11 months ago
- CloudReg☆11Updated last year
- 🌈☆66Updated 2 months ago
- GTree is a brain-wide tool for neuron tracing.☆17Updated 4 years ago
- Python scripts to read and write the CREMI hdf5 file format.☆39Updated 2 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆132Updated last week
- Axon/Myelin segmentation using Deep Learning☆123Updated 2 weeks ago
- A unified environment for DNN-based automated segmentation of neuronal EM images☆38Updated last year
- www.vaa3d.org☆113Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆32Updated 2 years ago
- Z-Brain Viewer and Analysis Scripts for MAP-Mapping☆24Updated 8 months ago
- ☆17Updated 2 years ago
- PyTorch Connectomics: segmentation toolbox for EM connectomics☆186Updated last week
- ☆20Updated 3 years ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated 2 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Updated last month
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…☆71Updated 3 years ago
- ☆12Updated 3 years ago
- High-throughput Detection of Neurons for Brain-wide analysis with Deep Learning☆17Updated 3 years ago
- Tools for distributed alignment of massive images☆90Updated last week
- ☆40Updated last year
- A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks☆111Updated 2 months ago