Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
☆29Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for deep-calcium
Users that are interested in deep-calcium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- HNCcorr algorithm for neuron identification in calcium imaging datasets.☆11Feb 11, 2023Updated 3 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Nov 26, 2023Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Jun 27, 2026Updated last week
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆164May 29, 2026Updated last month
- Code Samples☆24Jan 21, 2022Updated 4 years ago
- Analysis package for miniscope data☆14Dec 6, 2022Updated 3 years ago
- ☆17May 26, 2023Updated 3 years ago
- Deconvolution of calcium imaging data☆108Jun 30, 2026Updated last week
- ☆10Nov 5, 2020Updated 5 years ago
- 1xbet, 1xbet crash , 1xbet crash hack game, 1xbet hack, linebet crash hack, linebet hack, melbet crash hack, crash hack هكر الطيارة, لعبة…☆19Jan 13, 2025Updated last year
- Generalized algorithm for agglomerative clustering of signed graphs☆15Dec 16, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- StarDist PyTorch☆46Nov 13, 2022Updated 3 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- ☆10Jun 2, 2023Updated 3 years ago
- I read and summarized an academic paper every day for a year.☆11Dec 27, 2020Updated 5 years ago
- Saliency calculation module for Chainer☆12May 28, 2019Updated 7 years ago
- Useful classes and functions implementation for Chainer (the deep learning framework)☆11Mar 1, 2019Updated 7 years ago
- A package to analyse calcium imaging data recorded with the Miniscope.☆31Apr 11, 2022Updated 4 years ago
- For managing 2P imaging datasets from preprocessing to activity trace extraction☆10Apr 12, 2019Updated 7 years ago
- Feature and class visualization with deep neural networks in tensorflow. Contains deepdream, style transfer, receptive field visualizatio…☆29May 20, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- Registration of cells across sessions.☆78Updated this week
- DeepCAD: Deep self-supervised learning for calcium imaging denoising☆124Aug 3, 2023Updated 2 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆159May 29, 2022Updated 4 years ago
- 3-D convolution neural network using the Chainer☆14Feb 1, 2017Updated 9 years ago
- ☆11Jun 10, 2024Updated 2 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Jul 1, 2026Updated last week
- Simulation of reaction-diffusion equations☆11Feb 17, 2014Updated 12 years ago
- A fast multi-image tiff writer for Matlab☆18Jun 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jul 14, 2024Updated last year
- ☆18Jul 1, 2026Updated last week
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels rec…☆11Jul 1, 2025Updated last year
- Decoding behavior from calcium imaging data☆15Jun 18, 2020Updated 6 years ago