Alternatives and similar repositories for deep-calcium

Users that are interested in deep-calcium are comparing it to the libraries listed below

• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 6 years ago
• argunsah / SpineS
  Dendritic Spine Analysis Software
  ☆13Updated 2 years ago
• samik1986 / ML_Semantic_Segmenation_NMI
  ☆20Updated 3 years ago
• funkelab / lsd
  🌈
  ☆67Updated 3 months ago
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆39Updated 2 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated 5 months ago
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆143Updated last week
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆99Updated last year
• axondeepseg / axondeepseg
  Axon/Myelin segmentation using Deep Learning
  ☆124Updated last month
• flatironinstitute / NoRMCorre
  Matlab routines for online non-rigid motion correction of calcium imaging data
  ☆153Updated 3 years ago
• rochefort-lab / fissa
  A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
  ☆33Updated last month
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆31Updated last year
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆16Updated 3 years ago
• billkarsh / Alignment_Projects
  Aligner for large scale serial section image data
  ☆16Updated 2 years ago
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆104Updated last year
• ilastik / nature_methods_multicut_pipeline
  ☆22Updated 2 weeks ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆114Updated last year
• PytorchConnectomics / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆187Updated last month
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆71Updated 3 years ago
• AdaptiveMotorControlLab / CellSeg3D
  A napari plugin for direct 3D cell segmentation -- taking you through training, inference, and review of masks
  ☆112Updated 3 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆135Updated 2 weeks ago
• samuroi / SamuROI
  SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.
  ☆17Updated 6 years ago
• HelmchenLabSoftware / Cascade
  Calibrated inference of spiking from calcium ΔF/F data using deep networks
  ☆158Updated 2 months ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆63Updated this week
• BigNeuron / Code_and_Analysis_Tools
  ☆12Updated 3 years ago
• GTreeSoftware / GTree
  GTree is a brain-wide tool for neuron tracing.
  ☆17Updated 5 years ago
• Leveltlab / SpectralSegmentation
  Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences
  ☆13Updated last month
• codeneuro / neurofinder
  benchmarking challenge for finding neurons in imaging data
  ☆75Updated 6 years ago