Fast, Simple Calcium Imaging Segmentation with Fully Convolutional Networks (https://arxiv.org/abs/1707.06314)
☆29Dec 8, 2022Updated 3 years ago
Alternatives and similar repositories for deep-calcium
Users that are interested in deep-calcium are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- benchmarking challenge for finding neurons in imaging data☆76Apr 10, 2019Updated 7 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆723Apr 16, 2026Updated 2 months ago
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34May 25, 2026Updated 3 weeks ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 7 years ago
- Official code for BEAR. "Efficient neural network approximation of robust PCA for automated analysis of calcium imaging data", MICCAI 202…☆18Jun 16, 2022Updated 4 years ago
- dataset info for the neurofinder challenge☆13Aug 3, 2016Updated 9 years ago
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆163May 29, 2026Updated 2 weeks ago
- Analysis package for miniscope data☆15Dec 6, 2022Updated 3 years ago
- ☆17May 26, 2023Updated 3 years ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Deconvolution of calcium imaging data☆107Jun 4, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- ☆10Nov 5, 2020Updated 5 years ago
- 1xbet, 1xbet crash , 1xbet crash hack game, 1xbet hack, linebet crash hack, linebet hack, melbet crash hack, crash hack هكر الطيارة, لعبة…☆19Jan 13, 2025Updated last year
- Keras network for spike detection from calcium traces☆12Jul 7, 2020Updated 5 years ago
- Generalized algorithm for agglomerative clustering of signed graphs☆14Dec 16, 2021Updated 4 years ago
- StarDist PyTorch☆46Nov 13, 2022Updated 3 years ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆262Jul 4, 2023Updated 2 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- Chainer and PyTorch implementation of GAN with gradient reversal layer☆10Mar 19, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Open-source volumetric brain vasculature dataset — 12 two-photon microscopy stacks with dense voxel-level segmentation labels☆17Feb 16, 2026Updated 4 months ago
- Feature and class visualization with deep neural networks in tensorflow. Contains deepdream, style transfer, receptive field visualizatio…☆29May 20, 2020Updated 6 years ago
- A proof of concept to run python segmentations and recovering the results within QuPath☆19Feb 13, 2021Updated 5 years ago
- Low-level Vision Model Deployment☆10May 27, 2023Updated 3 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆158May 29, 2022Updated 4 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- 3-D convolution neural network using the Chainer☆14Feb 1, 2017Updated 9 years ago
- ☆11Jun 10, 2024Updated 2 years ago
- Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by Spi…☆18Jun 8, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Latent Constraints: Learning to Generate Conditionally from Unconditional Generative Models implemented by pytorch☆13Jun 11, 2018Updated 8 years ago
- A fast multi-image tiff writer for Matlab☆18Jun 5, 2024Updated 2 years ago
- ☸️ Hub for executable documents☆32Updated this week
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- Fast Exact Spike Inference Via L0 Optimization☆16Jun 10, 2020Updated 6 years ago
- A toolbox for inferring spikes from calcium traces.☆23Jun 16, 2023Updated 3 years ago
- Repository of code, data and CAD files associated with Luo*, Bondy* et al (2020). "An approach for long-term, multi-probe Neuropixels rec…☆11Jul 1, 2025Updated 11 months ago