Alternatives and similar repositories for deep-calcium

Users that are interested in deep-calcium are comparing it to the libraries listed below

• soltanianzadeh / STNeuroNet
  Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…
  ☆67Updated 5 years ago
• itsasimiqbal / SeBRe
  Developing a Brain Atlas through Deep Learning
  ☆53Updated last year
• funkelab / lsd
  🌈
  ☆59Updated 3 months ago
• argunsah / SpineS
  Dendritic Spine Analysis Software
  ☆13Updated 2 years ago
• RivuletStudio / rivuletpy
  Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Inst…
  ☆69Updated 2 years ago
• axondeepseg / axondeepseg
  Axon/Myelin segmentation using Deep Learning
  ☆123Updated this week
• brainglobe / brainreg
  Automated 3D brain registration with support for multiple species and atlases.
  ☆134Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆53Updated 5 years ago
• cremi / cremi_python
  Python scripts to read and write the CREMI hdf5 file format.
  ☆38Updated 2 years ago
• samik1986 / ML_Semantic_Segmenation_NMI
  ☆19Updated 2 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆120Updated last month
• funalab / QCANet
  Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development
  ☆31Updated 2 years ago
• SainsburyWellcomeCentre / lasagna
  3-D imaging visualisation through slicing
  ☆30Updated 6 months ago
• Vaa3D / vaa3d_tools
  www.vaa3d.org
  ☆110Updated last year
• GTreeSoftware / GTree
  GTree is a brain-wide tool for neuron tracing.
  ☆15Updated 4 years ago
• lmbneuron / D-LMBmap
  ☆37Updated last year
• bf777 / MesoNet
  A python toolbox for locating and exporting brain regions from mouse brain images.
  ☆12Updated 8 months ago
• zudi-lin / pytorch_connectomics
  PyTorch Connectomics: segmentation toolbox for EM connectomics
  ☆179Updated last month
• urakubo / UNI-EM
  A unified environment for DNN-based automated segmentation of neuronal EM images
  ☆37Updated 10 months ago
• BigNeuron / Data
  ☆16Updated 8 years ago
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆33Updated last year
• maweigert / neubias_academy_stardist
  ☆31Updated 4 years ago
• lmb-freiburg / Unet-Segmentation
  The U-Net Segmentation plugin for Fiji (ImageJ)
  ☆88Updated 2 years ago
• neurodata / CloudReg
  CloudReg
  ☆11Updated last year
• vessap / vessap
  Experimental code and examples for: Automated analysis of whole brain vasculature using machine learning
  ☆73Updated 3 years ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• dtward / image_lddmm_tensorflow
  Image mapping using the LDDMM algorithm, implemented in tensorflow
  ☆16Updated 3 years ago
• ilastik / nature_methods_multicut_pipeline
  ☆21Updated 4 years ago
• AICONSlab / MIRACL
  Multi-modal Image Registration And Connectivity anaLysis
  ☆45Updated this week
• BigNeuron / Code_and_Analysis_Tools
  ☆12Updated 3 years ago