losonczylab / simaLinks
Python package for analysis of dynamic fluorescence microscopy data
☆101Updated 6 years ago
Alternatives and similar repositories for sima
Users that are interested in sima are comparing it to the libraries listed below
Sorting:
- Tools for processing 2P recordings☆127Updated last year
- motion correction☆17Updated 2 years ago
- Deconvolution of calcium imaging data☆98Updated 7 months ago
- miniscope analysis pipeline with interactive visualizations☆95Updated last year
- ☆40Updated 3 years ago
- Single photon tools for Neuroscience☆35Updated last year
- A modular package to control stimulation and track behaviour☆46Updated 9 months ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- A companion website for DataJoint☆10Updated 3 weeks ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆93Updated 9 months ago
- Blazing fast calcium imaging analysis toolbox☆22Updated 8 years ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- Database for experimental neuroscience laboratories☆48Updated 3 weeks ago
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- Calcium Data Extraction and Analysis☆45Updated 2 years ago
- ☆34Updated 3 months ago
- IaC codebase for the NeuroCAAS Platform☆38Updated last year
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated last year
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆51Updated last year
- Browser-based NWB visualization and DANDI exploration☆59Updated this week
- Functions to assess quality of spike sorting results☆34Updated last year
- High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn☆69Updated 3 months ago
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- ☆52Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆151Updated 3 weeks ago
- Histology processing☆69Updated last month