losonczylab / simaLinks
Python package for analysis of dynamic fluorescence microscopy data
☆103Updated 6 years ago
Alternatives and similar repositories for sima
Users that are interested in sima are comparing it to the libraries listed below
Sorting:
- Tools for processing 2P recordings☆130Updated 2 years ago
- motion correction☆17Updated 2 years ago
- miniscope analysis pipeline with interactive visualizations☆96Updated last year
- Deconvolution of calcium imaging data☆101Updated 10 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated last year
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆156Updated last month
- Extract regions of interest based on correlated pixel intensity☆24Updated 8 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- ☆52Updated last year
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆147Updated last year
- A table containing imaging analysis tools for biology, with a focus on calcium imaging.☆54Updated 2 years ago
- A modular package to control stimulation and track behaviour☆47Updated last year
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Updated 2 years ago
- Calcium Data Extraction and Analysis☆47Updated 2 years ago
- ☆41Updated 4 years ago
- An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data☆54Updated last year
- Blazing fast calcium imaging analysis toolbox☆22Updated 8 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- spike extraction from calcium signals (Deneux et al., 2016)☆32Updated 5 years ago
- A companion website for DataJoint☆10Updated 2 months ago
- Single photon tools for Neuroscience☆36Updated 3 weeks ago
- SpikeGLX recording system GUI [Neuropixels NI]☆98Updated last week
- IBL core shared libraries☆64Updated last week
- ☆34Updated 6 months ago
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- Browser-based NWB visualization and DANDI exploration☆60Updated this week
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Updated 2 years ago