Python package for analysis of dynamic fluorescence microscopy data
☆103Mar 14, 2019Updated 7 years ago
Alternatives and similar repositories for sima
Users that are interested in sima are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Blazing fast calcium imaging analysis toolbox☆21Jun 20, 2017Updated 8 years ago
- Matlab routines for online non-rigid motion correction of calcium imaging data☆157May 29, 2022Updated 3 years ago
- Collaborative Approach for eNhanced Denoising under Low-light Excitation☆20Jun 5, 2025Updated 9 months ago
- Complete Matlab pipeline for large scale calcium imaging data analysis☆258Jul 4, 2023Updated 2 years ago
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆720Feb 19, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Aug 18, 2018Updated 7 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Registration of cells across sessions.☆77Aug 20, 2024Updated last year
- cell detection in calcium imaging recordings☆440Updated this week
- Computational toolbox for analysis of calcium imaging data of neuronal populations☆33Sep 14, 2023Updated 2 years ago
- benchmarking challenge for finding neurons in imaging data☆75Apr 10, 2019Updated 6 years ago
- motion correction☆17Jan 27, 2023Updated 3 years ago
- ☆41Sep 29, 2021Updated 4 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆68Sep 12, 2019Updated 6 years ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆86Mar 11, 2026Updated 2 weeks ago
- Constrained Nonnegative Matrix Factorization for microEndoscopic data☆152Aug 2, 2024Updated last year
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆100Nov 14, 2024Updated last year
- Convert Matlab v7.3 '.mat' files (i.e. HDF5 file format) into Python's pickle or numpy format.☆38Jul 29, 2012Updated 13 years ago
- Database for experimental neuroscience laboratories☆51Updated this week
- A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.☆34Mar 16, 2026Updated last week
- Calcium Data Extraction and Analysis☆49Dec 5, 2022Updated 3 years ago
- SamuROI - Structured analysis of multiple user-defined ROIs, an open source Python-based analysis environment for imaging data.☆17Apr 9, 2019Updated 6 years ago
- pyPhotometry code, GUI and micropython firmware☆15Nov 17, 2025Updated 4 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A package to analyse calcium imaging data recorded with the Miniscope.☆32Apr 11, 2022Updated 3 years ago
- An interactive image processing program for biologists written in Python.☆25Mar 4, 2026Updated 3 weeks ago
- Code published with the paper J. Mölter, L. Avitan, and G. J. Goodhill. "Detecting neural assemblies in calcium imaging data". BMC Biolog…☆11Apr 30, 2019Updated 6 years ago
- Software for universal camera control and frames acquisition☆18Feb 6, 2023Updated 3 years ago
- Deconvolution of calcium imaging data☆105Jan 21, 2025Updated last year
- GUI to compute and explore receptive fields, primarily from calcium imaging recordings☆13Jun 26, 2021Updated 4 years ago
- Automatic cell detection in microscopy data using convolutional networks☆34Nov 22, 2022Updated 3 years ago
- Extract regions of interest based on correlated pixel intensity☆24May 9, 2017Updated 8 years ago
- BIPs☆28Dec 26, 2017Updated 8 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Reads ImageJ ROI files into numpy arrays.☆14Feb 21, 2019Updated 7 years ago
- Notebooks to accompany sofroniew-vlasov-2015☆10May 18, 2019Updated 6 years ago
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆80Apr 16, 2025Updated 11 months ago
- ☆18Jul 27, 2023Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Jun 18, 2020Updated 5 years ago
- Gaussian Process Factor Analysis☆32Aug 27, 2015Updated 10 years ago
- Arduino-based microscope autofocus control☆15Sep 18, 2023Updated 2 years ago