Alternatives and similar repositories for sima:

Users that are interested in sima are comparing it to the libraries listed below

• kushalkolar / MESmerize
  Platform for Calcium Imaging analysis. DEPRECATED.
  ☆60Updated last year
• agiovann / CalBlitz
  Blazing fast calcium imaging analysis toolbox
  ☆23Updated 7 years ago
• cortex-lab / Suite2P
  Tools for processing 2P recordings
  ☆124Updated last year
• j-friedrich / OASIS
  Deconvolution of calcium imaging data
  ☆86Updated 3 weeks ago
• zebrain-lab / Toolbox-Romano-et-al
  Computational toolbox for analysis of calcium imaging data of neuronal populations
  ☆32Updated last year
• porteralab / EZcalcium
  Calcium Data Extraction and Analysis
  ☆43Updated 2 years ago
• billkarsh / SpikeGLX
  SpikeGLX recording system GUI [Neuropixels NI]
  ☆84Updated this week
• NTCColumbia / moco
  motion correction
  ☆16Updated 2 years ago
• flika-org / flika
  An interactive image processing program for biologists written in Python.
  ☆22Updated last year
• ransona / ROIMatchPub
  Match suite2p ROIs between imaging sessions
  ☆24Updated 5 years ago
• bahanonu / imaging_tools
  A table containing imaging analysis tools for biology, with a focus on calcium imaging.
  ☆46Updated last year
• nel-lab / FIOLA
  ☆33Updated last year
• spyking-circus / spyking-circus
  Fast and scalable spike sorting in python
  ☆88Updated last year
• portugueslab / stytra
  A modular package to control stimulation and track behaviour
  ☆44Updated 3 months ago
• nel-lab / mesmerize-core
  High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
  ☆62Updated 3 months ago
• denisecailab / minian
  miniscope analysis pipeline with interactive visualizations
  ☆93Updated 6 months ago
• yu-lab-vt / AQuA
  An event-based tool for analyzing and quantifying calcium or neurotransmitter imaging data
  ☆54Updated 9 months ago
• petersaj / AP_histology
  Histology processing
  ☆65Updated 10 months ago
• bahanonu / ciatah
  CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…
  ☆85Updated 3 months ago
• zhoupc / OASIS_matlab
  ☆34Updated 3 years ago
• AllenInstitute / neuroglia
  a Python machine learning library for neurophysiology data
  ☆36Updated 6 years ago
• Whitlock-Group / HERBS
  ☆52Updated 5 months ago
• cortex-lab / alyx
  Database for experimental neuroscience laboratories
  ☆46Updated this week
• cortex-lab / sortingQuality
  Functions to assess quality of spike sorting results
  ☆32Updated last year
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• VirtualBrainLab / Pinpoint
  Multi-probe trajectory planning in an intuitive 3D environment
  ☆52Updated last week
• wildrootlab / SHARCQ
  Tools to register histological section images and cell count locations to mouse brain atlas
  ☆25Updated 2 years ago
• petersenpeter / CellExplorer
  CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cell…
  ☆98Updated 2 months ago
• catalystneuro / neuroconv
  Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.
  ☆54Updated this week
• SpikeInterface / spiketoolkit
  Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.
  ☆50Updated 3 years ago