rochefort-lab / fissaLinks
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
☆33Updated last month
Alternatives and similar repositories for fissa
Users that are interested in fissa are comparing it to the libraries listed below
Sorting:
- 3-D imaging visualisation through slicing☆31Updated 11 months ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆99Updated last year
- Multichannel time series lossless compression in pure Python based on NumPy and zlib☆43Updated 9 months ago
- Match suite2p ROIs between imaging sessions☆27Updated 6 years ago
- ☆28Updated 2 months ago
- Pytorch implementation of LocaNMF☆36Updated 5 years ago
- miniscope analysis pipeline with interactive visualizations☆97Updated last year
- Control and design of two-photon photostimulation experiments☆17Updated 2 years ago
- Keras network for spike detection from calcium traces☆12Updated 5 years ago
- Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes sing…☆181Updated 5 months ago
- A modular package to control stimulation and track behaviour☆46Updated last year
- Compression, denoising and demixing of functional imaging recordings☆28Updated 7 years ago
- motion correction☆17Updated 2 years ago
- ☆52Updated last year
- Live Mouse Tracker analysis☆34Updated 3 weeks ago
- Functions to assess quality of spike sorting results☆34Updated 2 years ago
- Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF☆107Updated this week
- Platform for Calcium Imaging analysis. DEPRECATED.☆62Updated 2 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆32Updated last year
- Deconvolution of calcium imaging data☆104Updated 11 months ago
- Neuroelectrophysiology object model and data analysis in Python.☆50Updated 5 months ago
- ☆34Updated 7 months ago
- This toolbox includes routines for using principal component analysis (PCA) and independent component analysis (ICA) to extract cellular …☆26Updated 7 years ago
- Analyze neuroscience data in the cloud☆19Updated last year
- Create NWB files by converting and combining neural data in proprietary formats and adding essential metadata.☆71Updated 2 weeks ago
- Single photon tools for Neuroscience☆36Updated 2 months ago
- spike extraction from calcium signals (Deneux et al., 2016)☆34Updated 5 years ago
- Fast Exact Spike Inference Via L0 Optimization☆15Updated 5 years ago
- Tools for processing 2P recordings☆130Updated 2 years ago
- IBL core shared libraries☆66Updated last week