Facemap: Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
☆203Jan 26, 2026Updated 7 months ago
Alternatives and similar repositories for facemap
Users that are interested in facemap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a visualization method for neural data☆256Apr 4, 2025Updated last year
- cell detection in calcium imaging recordings☆473Sep 12, 2026Updated last week
- Registration of cells across sessions.☆79Jul 2, 2026Updated 2 months ago
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆202Oct 3, 2024Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Aug 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆169Updated this week
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆103Nov 14, 2024Updated last year
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆91Mar 11, 2026Updated 6 months ago
- Fast spike sorting with drift correction☆628Apr 27, 2026Updated 4 months ago
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- Region Of Interest Classification and Tracking☆41Updated this week
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆64Jul 1, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- Histology processing☆80Sep 11, 2026Updated last week
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆111Oct 27, 2023Updated 2 years ago
- Automated 3D cell detection in very large images☆231Sep 11, 2026Updated last week
- A Python package to visualise neuroanatomical data in atlas space☆671Sep 8, 2026Updated last week
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆46Aug 12, 2024Updated 2 years ago
- Brainways☆25Aug 28, 2025Updated last year
- IBL core shared libraries☆69Sep 7, 2026Updated last week
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code accompanying Steinmetz et al., 2019☆63Aug 9, 2021Updated 5 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- ☆11Oct 19, 2023Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆129Sep 8, 2026Updated last week
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated last year
- Ephys toolbox to match single units (electrophysiology) either within the same day (over splits) or across two days☆81Sep 3, 2026Updated 2 weeks ago
- Low friction belt treadmill for use in space constrained experimental rigs☆17May 22, 2026Updated 3 months ago
- ☆224Jun 3, 2024Updated 2 years ago
- ☆126Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated 2 years ago
- Distributed behavioral experiments☆95Feb 19, 2025Updated last year
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆91Updated this week
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆13Sep 9, 2026Updated last week
- WIP: Python port of Kilosort2☆49Jul 8, 2023Updated 3 years ago