Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
☆196Jan 26, 2026Updated 5 months ago
Alternatives and similar repositories for facemap
Users that are interested in facemap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a visualization method for neural data☆255Apr 4, 2025Updated last year
- cell detection in calcium imaging recordings☆455Jun 13, 2026Updated 2 weeks ago
- Registration of cells across sessions.☆78Aug 20, 2024Updated last year
- Variational Animal Motion Embedding - A tool for time series embedding and clustering☆201Oct 3, 2024Updated last year
- Neuropixels trajectory explorer with the Allen CCF mouse atlas☆82Jun 3, 2026Updated 3 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Calibrated inference of spiking from calcium ΔF/F data using deep networks☆163May 29, 2026Updated last month
- EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time seri…☆90Mar 11, 2026Updated 3 months ago
- Fast spike sorting with drift correction☆621Apr 27, 2026Updated 2 months ago
- Match suite2p ROIs between imaging sessions☆28Apr 12, 2019Updated 7 years ago
- 3-D imaging visualisation through slicing☆31Jan 14, 2025Updated last year
- Image processing pipeline to correct motion artifacts and complex image distortions in neuronal calcium imaging data.☆28Dec 21, 2023Updated 2 years ago
- CIAtah (pronounced cheetah): a software package for calcium imaging analysis of one- and two-photon imaging datasets. Documentation: http…☆101Nov 14, 2024Updated last year
- A curated list of awesome Janelia software☆17Feb 26, 2025Updated last year
- The codes, software, models, protocols, and etc. for building and using MINI2P to do the freely-moving recording and analysis. More detai…☆108Oct 27, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Histology processing☆77Jun 3, 2026Updated 3 weeks ago
- Closed-loop behavioral experiment toolkit using pose estimation of body parts.☆64Jul 1, 2023Updated 2 years ago
- Automated 3D cell detection in very large images☆229Jun 18, 2026Updated last week
- A Python package to visualise neuroanatomical data in atlas space☆658Jun 22, 2026Updated last week
- Harvey Lab miniaturized mouse VR rig hardware for virtual navigation and decision-making tasks☆45Aug 12, 2024Updated last year
- IBL core shared libraries☆68Jun 23, 2026Updated last week
- ☆11Oct 19, 2023Updated 2 years ago
- Code accompanying Steinmetz et al., 2019☆63Aug 9, 2021Updated 4 years ago
- Tools for processing 2P recordings☆132Oct 9, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆223Jun 3, 2024Updated 2 years ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆126Jun 8, 2026Updated 3 weeks ago
- Tools to work with Allen Inst CCF data in matlab☆152Jul 15, 2025Updated 11 months ago
- Control and design of two-photon photostimulation experiments☆18Jan 1, 2024Updated 2 years ago
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆16Oct 26, 2022Updated 3 years ago
- Open source ca imaging processing tools to aquire neural traces from 2 photon image sequences☆12May 28, 2026Updated last month
- ☆127Mar 31, 2026Updated 3 months ago
- A MATLAB toolbox for running behavioral neuroscience experiments and managing data☆33May 28, 2024Updated 2 years ago
- Configurable acquisition from multiple FLIR/Point Grey camera using Bonsai and Python to h264 compress the video on the GPU.☆16Mar 7, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Guided Photometry Analysis in Python, a free and open-source FP analysis tool.☆87Updated this week
- WIP: Python port of Kilosort2☆49Jul 8, 2023Updated 2 years ago
- Distributed behavioral experiments☆94Feb 19, 2025Updated last year
- Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike dec…☆722Apr 16, 2026Updated 2 months ago
- Repository for BehaviorDEPOT pipeline app files and source code☆43Jan 6, 2026Updated 5 months ago
- SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers☆362Updated this week
- SpikeGLX postprocessing [tshift filter CAR fix join extract]☆16May 5, 2026Updated last month